Query= MSMg01no125_j20.b1 MSMg01no125_j20.b1 CHROMAT_FILE:
MSMg01no125_j20.b1 PHD_FILE: MSMg01no125_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:43 2005
(627 letters)
>mm_chr10_5319609_5320636
Length = 1028
Score = 1147 bits (593), Expect = 0.0
Identities = 618/629 (98%), Gaps = 7/629 (1%)
Strand = Plus / Minus
Query: 3 gaattctcagagttttccc---g-tgctccatcagggtgactctgccttagagattttag 58
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct: 828 gaattctcagagttt---caaagttgctccatcagggtgactctgccttagagattttag 772
Query: 59 cgccaataggttaatcatctcagagtaaaagggtgcttattttaatattaacttactgac 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 cgccaataggttaatcatctcagagtaaaagggtgcttattttaatattaacttactgac 712
Query: 119 ttaaggtcatccaattttcaagagtcctgaaaaattcaatagaagacagagcaatagtga 178
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 711 ttaaggtcatccaattttcaagagtactgaaaaattcaatagaagacagagcaatagtga 652
Query: 179 taagtggccttgctcatggtcattcttcaatggcttctgtatagacaagggtgacagtgt 238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 taagtggccttgctcatggccattcttcaatggcttctgtatagacaagggtgacagtgt 592
Query: 239 agactgcatttgtatgggaacacttaactgtgtggctgtacccaaagaactcaatcaata 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agactgcatttgtatgggaacacttaactgtgtggctgtacccaaagaactcaatcaata 532
Query: 299 gggatattttaagtaattttgtccagaataacatgtgcatattctctccaagtaaatctc 358
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 531 gggatattttaagtaattttgtccagaataacatgtgcatattctctctaagtaaatctc 472
Query: 359 tatctcatctttctcttctatttctttcagattggcagaaaaataactgtttgtcccttt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tatctcatctttctcttctatttctttcagattggcagaaaaataactgtttgtcccttt 412
Query: 419 tctagaacacatactcatggaggaaggaggaaagtaagggatggaccagggtctaaaacc 478
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tctagaacacatactcatggaagaaggaggaaagtaagggatggaccagggtctaaaacc 352
Query: 479 aaatgacacaaaagaaagtgcatataacaaagagaaccctgaggcctggggatctgcata 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaatgacacaaaagaaagtgcatataacaaagagaaccctgaggcctggggatctgcata 292
Query: 539 tagtaggtaactcagtttgcagatcccacagggtcaaggaagatataatgagataattac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tagtaggtaactcagtttgcagatcccacagggtcaaggaagatataatgagataattac 232
Query: 599 atgtgtacatcttacaaagctggggggga 627
|||||||||||||||||||||||||||||
Sbjct: 231 atgtgtacatcttacaaagctggggggga 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1028
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1018
Effective search space: 628106
Effective search space used: 628106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_j20.g1 MSMg01no125_j20.g1 CHROMAT_FILE:
MSMg01no125_j20.g1 PHD_FILE: MSMg01no125_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:43 2005
(550 letters)
>mm_chr10_5177441_5178390
Length = 950
Score = 1025 bits (530), Expect = 0.0
Identities = 545/550 (99%)
Strand = Plus / Plus
Query: 1 tgtccctgctgtgtttttccagaacatgctggtggaaatcgaacagaaagtggtggccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtccctgctgtgtttttccagaacatgctggtggaaatcgaacagaaagtggtggccct 260
Query: 61 gtcgcagctgtccgtgcacaatgagaacctgctgttggagggcaaggctcacacgaaaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gtcgcagctgtccgtgcacaatgagaacctgctgttggagggcaaggctcacactaaaga 320
Query: 121 ggaggccgagcagctagcggtgaagctgaggctactcaaagggagccttggagagctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaggccgagcagctagcggtgaagctgaggctactcaaagggagccttggagagctgca 380
Query: 181 gagggccctgcatgacagacagctcgacatgcaggtgagcatggctacctagcctgggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggccctgcatgacagacagctcgacatgcaggtgagcatggctacctagcctgggct 440
Query: 241 ggcatggcacttgtgacacacttaccacatacatctctgtgagtgtggcagtggagagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcatggcacttgtgacacacttaccacatacatctctgtgagtgtggcagtggagagga 500
Query: 301 aatgttggagctgaatacacatctatgcaggcttggtttcagcaacacatcggcatgtat 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 aatgttggagctgaatacacatctatgcaggcttggtttcagtaacacatcggcatgtat 560
Query: 361 attttcactctgccttgggtctgggtttccagctttgctgttagcattgattgaccagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttcactctgccttgggtctgggtttccagctttgctgttagcattgattgaccagta 620
Query: 421 tgtggatctgagcatgaaaggtgccctccttttcctgtcctcttccctcctttcctctcc 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 tgtggatctgagcatgaaaggtgccctccttttcctgtcctcttccctcccctcctctcc 680
Query: 481 cctcctctccccctcctctccccaccctttccctttcacccctttccctcccagtcccct 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccctctccccctcctctccccaccctttccctttcacccctttccctcccagtcccct 740
Query: 541 tctatccctt 550
||||||||||
Sbjct: 741 tctatccctt 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
