BAC Information

Click to search

BAC

Clone NameMSMg01-126A19
Chromosome10 (Build37)
Map Location 98,795,732 - 98,796,187
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667438, EG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222
Downstream geneGad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126A19.T7 (MSMg01no126_a19.b1)MSMg01-126A19.TJ (MSMg01no126_a19.g1)
ACCAG334972AG334973
length713792
length of high quality
(start - end)
456 (43 - 498)115 (69 - 183)
definitionCHROMAT_FILE: MSMg01no126_a19.b1 PHD_FILE: MSMg01no126_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:17 2005CHROMAT_FILE: MSMg01no126_a19.g1 PHD_FILE: MSMg01no126_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATT
CACTAAGACCCTCCTGCCTCTGCCTCCAGAATGGGGGATTAAAGGTGTGC
ATTCCCACCCCCAGTTATGCTCCATGTTTTAAAGGTGGTGAACTAAAAGC
TATCCAACCTCATTTTGCTAATTGAGTGTATGCTTAATTGAAAAAAAATA
TTAAAAACTAGGTGGCCCGTCCACATTTTGGCCAAAGGACAATCCGAAGA
ACCACAAAGGGGTCAGAAGTAAGTATTTATAAGTGATTTTAACAACTAAA
CACCTCGAAGGCAAGGGGAACCTTGTTGTGTGATTAAAACAGAACAAACA
CGGTCGCCTCCAGGTTGCAAGCTGGGGACCACAGGACATGAGGAACAAGC
AAGATGATTAGGAGCCCAAAGTCCCGCCCCCCCCACAACTTCCCTATGCC
CTAAGAAAGACAAGAATACACATCCTTGAGTTTCTATCGTCCATTCAGAA
ACATTAACAATTGTCTCCCGAAACCCTTTACAAAGACCTTACCTTCAACA
GGCTACAGGCAATAGTAACTACCTTGCTACTAAACTATATAACTAGATGC
TTTGGGTTGAAATCACACATTTAATAACAGGTAATGGTTTCCCTGGTATA
ACCATGACAGATGTTGCGTCCGCTAAAGACCTGCATGCACTGGGCCTCAT
CCCCTTGTTATAA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCCTTGCTCAGCTGAGTGGCTCCTTATTCA
GCTTGGCTATCTGTCCAGAAGGACAATGCCTTCAGAAGCCGTCCTTAGAT
CTCTTTCCACACACAGGNGGGGAGGAGGAAGGTAGTTTATTCCTCTTCTT
CTTCCCTCCCTTCCCTTCCTTCCTTTCTTTTCCTTCCCCCCTCTTCTCTT
TTCTCTTCTTGTTTTTTCCTTTTTTTTTCCTTTTCCCCCCCTTTCTCTCC
CCTTTTCCCCCTTCTTTCCTTCCCCCTTTTCCTTTTTTTTCCTCTTCACC
TTTCCCTCCTCTCCCCCCTTTTTCCTTGCTCCTCCTCTTTCGTTCGATCT
TTTTTTTTTTATTTTCTTTTCTCTTTCTCCCTCCCCCCCCCTTTTCTTCC
CTCCTTTCTTCTCTCTTTCGCTTTTCCTCTTTCTCTCTTTCTCCTCCTCT
TTCTTTCTTTCTCCTCCCCCCTTTCTTTTTTCTCCTTCCCCTCCCCCCCT
TCCCCCTCTTTCTTTCTTCCCTCCCCCCTTTTTCTTCCCCTTTCCCTCCC
TGCCCCCCCTTTTCCCCCTCTTTCTTTTCTTTTCCCCCCCCTTTTCCCCC
TCTTCCTTCCCCTTTTCTTTCTCTCTCTTTCCTTTATCCCTCTTTTTCCC
CCCTCGCTCCCCTCTCCGCTCTTTCCTTATCCCCCCCTTTCCCTTCCTTC
CTTCCTTTTCCCGCCCCTTTTTTTTCTTTCTCTTCTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_a19.b1 MSMg01no126_a19.b1 CHROMAT_FILE:
MSMg01no126_a19.b1 PHD_FILE: MSMg01no126_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:17 2005
         (456 letters)



>mm_chr10_98795529_98796387
          Length = 859

 Score =  791 bits (409), Expect = 0.0
 Identities = 444/457 (97%), Gaps = 5/457 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcactaagaccctcctgcctctgcctccagaatgggggattaaaggtgtgcattcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcactaagaccctcctgcctctgcctccagaatgggggattaaaggtgtgcattcc 263

                                                                       
Query: 64  cacccccagttatgctccatgttttaaaggtggtgaactaaaagctatccaacctcattt 123
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 264 cacccccagttatgctccatgttttaaagatggtgaactaaaagctatccaacctcattt 323

                                                                       
Query: 124 tgctaattgagtgtatgcttaattgaaaaaaaatattaaaaactaggtggcccgtccaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgctaattgagtgtatgcttaattgaaaaaaaatattaaaaactaggtggcccgtccaca 383

                                                                       
Query: 184 ttttggccaaaggacaatccgaagaaccacaaaggggtcagaagtaagtatttataagtg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 ttttggccaaaggacaatccgaagaaccacaaaggggtcagaagtaagtatttataggtg 443

                                                                       
Query: 244 attttaacaactaaacacctcgaaggcaaggggaaccttgttgtgtgattaaaacagaac 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attttaacaactaaacacctcaaaggcaaggggaaccttgttgtgtgattaaaacagaac 503

                                                                       
Query: 304 aaacacggtcgcctccaggttgcaagctggggaccacaggacatgaggaacaagcaagat 363
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 aaacacagtcgcctccaggttgcaagctggggaccacaggacatgaggaacaagcaaaat 563

                                                                       
Query: 364 gattaggagcccaaagtcccgccccccccaca-ac---ttccctatgccctaagaaagac 419
           |||||||||  ||||||||| |||||| |||| ||   ||||||||||||||||||||||
Sbjct: 564 gattaggagttcaaagtccc-ccccccacacacacagcttccctatgccctaagaaagac 622

                                                
Query: 420 aagaatacacatccttgagtttctatcgtccattcag 456
           |||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagaatacacatccttgagtttctatcgtccattcag 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 859
Length adjustment: 10
Effective length of query: 446
Effective length of database: 849
Effective search space:   378654
Effective search space used:   378654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)