BAC Information

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BAC

Clone NameMSMg01-126E13
Chromosome10 (Build37)
Map Location 109,940,616 - 110,113,004
singlet/doubletdoublet
Overlap gene9230102K24Rik, LOC100042518
Upstream geneNav3, LOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855
Downstream geneE2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126E13.T7 (MSMg01no126_e13.b1)MSMg01-126E13.TJ (MSMg01no126_e13.g1)
ACCAG335143AG335144
length698704
length of high quality
(start - end)
280 (46 - 325)298 (72 - 369)
definitionCHROMAT_FILE: MSMg01no126_e13.b1 PHD_FILE: MSMg01no126_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:36 2005CHROMAT_FILE: MSMg01no126_e13.g1 PHD_FILE: MSMg01no126_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,940,616 - 109,940,891)(110,112,708 - 110,113,004)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTACCTCTGTGCCCCATTTTTTAATGGGGGTATTTGATTT
TCTGGAGTCTACCTTCTTGAGTTCTTTATATATATTAGATATTAGTTCCC
TATCTGATTTAGGATTGGTAAAGATCCTTTCCCAGTCTGTTGGTGGCCTT
TTTTCTAGGAACAATCTATGTAATTGTTCCATATAAACATACAAGCAAAG
CAAAACTATGTATATCACAATTATGTTTAAAATAGTAAAAATACATAATG
ATATACAGATATGGCACTAATATGTATACTCACACACATAACTGAACATC
ACACTTATAGTGGATATCAGGGTTTCATGCTCTCAAACTCCATTCTAACT
TTCTTATAGATGACCACCCTACGAAAGCTAAGACTTAATATTTAGATGTC
CTTTATTTAAGATTCTTTTTTTTCCCTTTTTTATTAGGCATTTACCTCAT
TTACATTTCCAATGTTATACCAAAAGTCCCCCATACCCACACACCCCCTT
ATCCCTACTCACCCACTCCCCCTTTTTGTCCCTGGCGTTTCCCGTTACTG
TAGCATATAATGCCCGCTTGTCCTACGGTCATTCTCTCTTTACTGACGTT
CCACTCCTGTATCCTCTTGATACCTTTGCCTCCTTAGCCCTTATTTCT
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGGAAGGTGGAAAGTAACAGAAAATGT
TATGATATCTATTGTTGCATAAAAGGTCAGTGTGATATGAGCCAACAAAT
ATTTAATGATGTTATAAATAGTATACTGTGGGTCAGGAGTTCAAAAAGAC
ACACATATAAACCTACACATCACATCTGTGTGTGCATGTGCACACACACA
CACACACACACTCACACACACTTATTGGAGTGGATTGGATATCATGACTA
TGGAAGTTGACTAGGCAAGTCTGATATGGTTACATGGTTGTTTGTCTGCC
CAACAAGAAGGATGCTATTGGGTGCAGGCACTATGCTCTGTAAGTGGGAT
TCCTTCTTCCTCCCCCAAGGAAGGTAGAGCCTTTGTTTTAGGAGGTATTT
GATATAAAGGTGTATAATTCCTATTTGACCATTGATACTCATTATCACAT
ACTGTCTGTCTTTATATCTTGCCCGTGTTTAAGTACACTATCCTCCCTGA
TACGCATGCTCACGCCCATTCTTTATTGACTTCTTTGACTCGTTCCTTAC
ATTTATTCCTCCCTATCTTTCCCCCTGTTTCCCGCCCCCCCTTCCCTCTT
CCTTACCCCCATTTCCTCCTCTCTCCTTCCGCCCTTTTTTTTCTTCTTTT
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_e13.b1 MSMg01no126_e13.b1 CHROMAT_FILE:
MSMg01no126_e13.b1 PHD_FILE: MSMg01no126_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:36 2005
         (280 letters)



>mm_chr10_109940412_109941091
          Length = 680

 Score =  503 bits (260), Expect = e-147
 Identities = 272/276 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtttacctctgtgccccattttttaatgggggtatttgattttctggagtc 64
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgtttagctctgtgccccattttttaatgggggtatttgattttctggagtc 264

                                                                       
Query: 65  taccttcttgagttctttatatatattagatattagttccctatctgatttaggattggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taccttcttgagttctttatatatattagatattagttccctatctgatttaggattggt 324

                                                                       
Query: 125 aaagatcctttcccagtctgttggtggccttttttctaggaacaatctatgtaattgttc 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 aaagatcctttcccagtctgttggtggccttttttctaggaaccatctatgtaattgttc 384

                                                                       
Query: 185 catataaacatacaagcaaagcaaaactatgtatatcacaattatgtttaaaatagtaaa 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catatagacatacaagcaaagcaaaactatgtatatcacaattatgtttaaaatagtaaa 444

                                               
Query: 245 aatacataatgatatacagatatggcactaatatgt 280
           ||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatacataatgatatacagatatggcactaatatgt 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no126_e13.g1 MSMg01no126_e13.g1 CHROMAT_FILE:
MSMg01no126_e13.g1 PHD_FILE: MSMg01no126_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:36 2005
         (298 letters)



>mm_chr10_110112620_110113317
          Length = 698

 Score =  462 bits (239), Expect = e-134
 Identities = 283/305 (92%), Gaps = 15/305 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggaaggtgg-----aaagtaacagaaaatgttatgatatctattgttgcataaaagg 55
           ||||||||||||     |||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttggaaggtggaaaaaaaa--aacagaaaatgttatgatatctattgttgcataaaagg 328

                                                                       
Query: 56  tcagtgtgatatgagccaacaaatatttaatgatgttataaatagtatactgtgggtcag 115
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 327 tcagtgtgatatgagccaacaaatatttaatgatgttataaatagtatacggtgggtcag 268

                                                                       
Query: 116 gagttcaaaaagacacacatataaacctacacatcacatctgtgtgtgcatgtgcacaca 175
           |||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct: 267 gagttcaaaaagacacacatataaacctacacatcacatctgtgagtgcacgcgcacaca 208

                                                                       
Query: 176 cacacacacacacactcacacac--acttattggagtggattggatatcatgactatgga 233
           |||||||||||||||      ||  |||||||||||||||||||||||||| ||||||||
Sbjct: 207 cacacacacacacac------acttacttattggagtggattggatatcataactatgga 154

                                                                       
Query: 234 agttgactaggcaagtctgatatggttacatggttgtttgtctgcccaacaagaaggatg 293
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 153 agttgactaggcaagtctgatatggttgcatggttgtttgtctgcccaacaagaaggctg 94

                
Query: 294 ctatt 298
           |||||
Sbjct: 93  ctatt 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)