BAC Information

Click to search

BAC

Clone NameMSMg01-126O20
Chromosome10 (Build37)
Map Location 51,498,162 - 51,498,638
singlet/doubletsinglet
Overlap genenone
Upstream geneAscc3, Sim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
Downstream geneVgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126O20.T7 (MSMg01no126_o20.b1)MSMg01-126O20.TJ (MSMg01no126_o20.g1)
ACCAG335609AG335610
length701797
length of high quality
(start - end)
483 (44 - 526)155 (77 - 231)
definitionCHROMAT_FILE: MSMg01no126_o20.b1 PHD_FILE: MSMg01no126_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:30 2005CHROMAT_FILE: MSMg01no126_o20.g1 PHD_FILE: MSMg01no126_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCCGCGGAA
TTCTAGATTGCTCCCGTAACATTGTTACATTTTCTCGTGTGTCACAATGA
TTCAGAGATCTCATAGAACTGTGGCCATGGAGGAAGCTTAGAGATGCTAA
ACGCGCCCAATAAATAGTCCATGAACCAACTCCAACAGCATCATACAGGA
AATCATTAAAATACAAAAGTATGGCTCTGATTTTTTTTTTGCCTCTATGT
GTCCAAAGATCTCTAATGCTGAAATAATAATAACAATCAAAATAGTTTAA
AAATTAAAGTTATTGAGAACAAATTTCATGGAGAACATTAATTCCAATGC
AAATACTTTTGTCTTCTCTTTGTATGTAATCCCTGTCTGATGAAGCTGCA
TTCAAATCACACAGCAACCACACGTTAACTTTGAAAACTTAGGAAGGAAA
ACCACTTTCAGGGATCTCTCCATTGTGCTTATATCTTAGTTTTAGAATAA
TGATGCTTATAGCTGTAGCATCATTTACATAAACATTTTTATCTATTGCA
GCAGGTTGTTTTATTTCATGGAATCCAAGCATCTGAATCATAAAGTGATT
CTGACTGTTGGGATGTGAGCAGTTGAGCCGAGAACACTCTCATGTTTCAT
GCAATAGGATGATTCTCATGTTCAATGCATGGGATGACTCTGTTTCCCAT
N
NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGTCCTTTTTGAGAGATCAAGTT
CTAAACTACTGAGTCATCTCTTCAGCTCTGTTTTGTATTGTTTAAGACAA
GGTCTCATATCTTTTTTTATTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATTTATTTATTTGTGTGTGGGTGTGTTGGT
TGGGTGGTGTGTGGTCTGTGTGGGTGTGTTGTGTGTTGGGTGGTGGTGGT
GTTGTGGTGGGGGGGGGGGCTGGGTGTCTGTTTTTTTTGTTGTTCTCCCT
TCCCCTTCCCACTCTTCCTGCTGTTCTTGCCCTCCCCCCGGGGGGTGGGT
TGGGCTGGTGGTGGTGGTGTGGTGGGCGTGTGGTGGGGGGGCCCCCCCCT
CTGGGTGGCGGTCCCGTCTTCTTTTTTTGTCTCTTCCCCCCCTTTCTCGC
TCTTTTGTTGTCCCCCTTTCCCGCTCTTCCTCCCCTCTTTCGTTCTCCCT
TTCTCTTTTTTCCTCCCCTCTCCCGTTCGTTTCTCACCTTTCCGTTTTCA
TCCTTCTTTTCTTCTTCTTCTCCTCTGCCCTCCGCTTTGTCCTGTTCTTC
ACCGTCCGCCACTTTTTCTCCCTTTGTTTTTCCGCTTTTTTTGTTTGTTT
CTGCGCGCTGTCTTTCTTGTCTTGCCTATTGTTCCTTTGCTTCGCGTCGC
TGTCGTTTGGGTTTTCCGTCCGCTGGTATTCTCTCCTCCTCCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_o20.b1 MSMg01no126_o20.b1 CHROMAT_FILE:
MSMg01no126_o20.b1 PHD_FILE: MSMg01no126_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:30 2005
         (483 letters)



>mm_chr10_51498024_51498907
          Length = 884

 Score =  716 bits (370), Expect = 0.0
 Identities = 450/492 (91%), Gaps = 28/492 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagattgctcccgtaacattgttacattttctcgtgtgtcacaatgattcagag 64
           |||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct: 615 gaattctagattgctctcgtaacattggtatattttctcgtgtgtcacaatgattcagag 556

                                                                       
Query: 65  atctcatagaactgtggccatggaggaagcttagagatgctaaacgcgcccaataaatag 124
           ||||||||||||||||| ||||           |||||||||||||||||||||||||||
Sbjct: 555 atctcatagaactgtggtcatg-----------gagatgctaaacgcgcccaataaatag 507

                                                                       
Query: 125 tccatgaaccaactccaacagcatcatacaggaaatcattaaaatacaaaagtatggctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tccatgaaccaactccaacagcatcatacaggaaatcattaaaatacaaaagtatggctc 447

                                                                       
Query: 185 tgattttttttttgcctctatgtgtccaaagatctctaatgctgaaataataataacaat 244
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tga---tttttttgcctctatgtgtccaaagatctctaatgctgaaataataataacaat 390

                                                                       
Query: 245 caaaatagtttaaaaattaaagttattgagaacaaatttcatggagaac----attaatt 300
           ||||||| |||||||||||||||||||||| ||| ||||||||||||||    |||||||
Sbjct: 389 caaaataatttaaaaattaaagttattgagtacacatttcatggagaacattaattaatt 330

                                                                       
Query: 301 ccaatgcaaatacttttgtcttctctttg---------tatgtaatccctgtctgatgaa 351
           ||||||||||||||||||||||| |||||         ||||||||||||||||||||||
Sbjct: 329 ccaatgcaaatacttttgtcttccctttgtatcatcactatgtaatccctgtctgatgaa 270

                                                                       
Query: 352 gctgcattcaaatcacacagcaaccacacgttaactttgaaaacttaggaaggaaaacca 411
           |||||| ||||||||||||| ||  | || ||||||||||||||||||||||||||||||
Sbjct: 269 gctgcaatcaaatcacacagtaa-tagactttaactttgaaaacttaggaaggaaaacca 211

                                                                       
Query: 412 ctttcagggatctctccattgtgcttatatcttagttttagaataatgatgcttatagct 471
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 210 ctttcagggatctctccattgtgtttatatcttagttttagaataatgatgcttatagct 151

                       
Query: 472 gtagcatcattt 483
           ||||||||||||
Sbjct: 150 gtagcatcattt 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space:   413402
Effective search space used:   413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)