Query= MSMg01no127_d18.b1 MSMg01no127_d18.b1 CHROMAT_FILE:
MSMg01no127_d18.b1 PHD_FILE: MSMg01no127_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:54 2005
(246 letters)
>mm_chr10_109478241_109478886
Length = 646
Score = 337 bits (174), Expect = 5e-97
Identities = 231/270 (85%), Gaps = 34/270 (12%)
Strand = Plus / Minus
Query: 1 actggagcgtaactcactaaacagattgctcccttccatcccagctgttcacatcttcct 60
|||||| |||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 570 actggaacgtaactcactaaacagattgctctcttccatcccagctg-tc-ca------- 520
Query: 61 ttgctgtgacccttcatgaacatcagatagataaatcaggacaattaaat---------- 110
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 -tgctgtgacccttcatgaacatcagatagataaatcaggacaattaaatacacacacac 461
Query: 111 --------------acacacacacacacacacattcttgtatagaataaagaaaataaag 156
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acacacacacacacacacacacacacacacacattcttgtatagaataaagaaaataaag 401
Query: 157 ctgagtttctgaaattctttcatatctattttaaccattctgagaggtagaactacatag 216
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 400 ctgagtttctgaaattctgtcatatctattttcaccattctgagaggtagaactacatag 341
Query: 217 gttttgccagtctatttagtgactatatgt 246
||||||||||||||||||| ||||||||||
Sbjct: 340 gttttgccagtctatttagggactatatgt 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no127_d18.g1 MSMg01no127_d18.g1 CHROMAT_FILE:
MSMg01no127_d18.g1 PHD_FILE: MSMg01no127_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:55 2005
(472 letters)
>mm_chr10_109329457_109330333
Length = 877
Score = 816 bits (422), Expect = 0.0
Identities = 464/482 (96%), Gaps = 10/482 (2%)
Strand = Plus / Plus
Query: 1 tgatctgacctttaaaaggaactcagatag---gatgtcttgattctgtcctgatgataa 57
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tgatctgacctttaaaaggaactcagatagaattatgtcttgattctgtcctgatgataa 260
Query: 58 atacttccgttatggcctcaaggtctgggaccaaattttcatacttttaatttatcaaat 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacttccgttatggcctcaaggtctgggaccaaattttcatacttttaatttatcaaat 320
Query: 118 tggtaatgattcagtatagtagcccctgaagacaattcagttatctacaaggtaaatcag 177
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtaatggttcagtatagtagcccctgaagacaattcagttatctacaaggtaaatcag 380
Query: 178 tggaaatttcaccttttcaaactacatgacactggggattctgtgggcagctcctttcca 237
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 381 tggaaatttcaccttttcaaactacatgacattggggattctgtgggcagctccttttca 440
Query: 238 aatctctctatttgaagctgtgatttttt-cc-cccaagtaacacatgcaatttatttta 295
||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 441 aatctctctgtttgaagctgtgatttttttcctcccaagtaacacatgcaatttatttta 500
Query: 296 tttttattttcaggaaatttaggtacatgttgaaaatcattgtgatatttcgaaaatctt 355
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tttttattttcaggaaatttaggtacatgttgaaaatcattgtgatattttgaaaatctt 560
Query: 356 catgacatgcagaaatcaacttcctactatacttaattcttttcaaaaa-----tttttt 410
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 catgacatgcagaaatcaacttcctactatacttaattcttttcaaaaaaaaaatttttt 620
Query: 411 tttacttatttactctacatcctgctcactgtccctctcagtcaccccttctattttagg 470
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 tttacttatttactctacatcctgctcactgcccctctcagtcaccccttctattttagg 680
Query: 471 ac 472
||
Sbjct: 681 ac 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 877
Length adjustment: 10
Effective length of query: 462
Effective length of database: 867
Effective search space: 400554
Effective search space used: 400554
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
