BAC Information

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BAC

Clone NameMSMg01-127F17
Chromosome10 (Build37)
Map Location 105,613,268 - 105,613,542
singlet/doubletsinglet
Overlap genenone
Upstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758
Downstream geneEG639162, Ppfia2, Olfr1556-ps1, 8430416H19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127F17.T7 (MSMg01no127_f17.b1)MSMg01-127F17.TJ (MSMg01no127_f17.g1)
ACCAG335922AG335923
length721720
length of high quality
(start - end)
277 (44 - 320)125 (127 - 251)
definitionCHROMAT_FILE: MSMg01no127_f17.b1 PHD_FILE: MSMg01no127_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:04 2005CHROMAT_FILE: MSMg01no127_f17.g1 PHD_FILE: MSMg01no127_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTTTCCTTGTCCATTATGAAAATTGCAGTCTGTGACTTTGTTAAAT
GCATAATGTGCCAACATATTAATCCAGGTAACAATATCAAACAAATAAAA
AAAAAAGAAAGAAAAGGAAAATGGCTTCATATCCCTAAGGTGTATAGGTG
CTGTGACCCATAATCCACTGGAAGAGTCGAATGAATACTCAATTTTGTTT
CCAACTAAAAAGATAATCTGTCAAGAGATTTCTATTCTTATCACTTTTAG
TGACTGACTGTTCACTCTATACTACTATATTCTGGATAAAGATCCTATAC
ATAAATTTATTTAAGCTTATCTTATAGACCAACACAAACGAATAAACCTA
TATTTGTTAATATATTCCCCCCCATAATAATGATGCAGATAGAAGATAGC
AACATCTGCTGAGCATATAATAAGATGCATAGCATGAAATCTATTTTACA
CATGATGGAGCACTGAAACACATCCATGCATGTTATACAACTGAGATGAT
GTATGGTCGAGTGCAAATCAGCATTCATGGTTCTTTTTCCTCAGATCTTG
CAATCCTCTAGTGTAACAGTTTCAAGAAGCGTGAACAATTCACCTAATAC
ATTTTTCGTTAATTTCTTAGCATACTGAATGATCTACGAACTTGTCTATG
TCTCAAATAAAAACTGTATTA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGAATAGCCCCTCTGGCCATC
TATCCCTTGCTTCAGGGAAGATCGAGTGGGGATGAGAGCCCTGGGATGTA
TGCTTGTTATAGCGTGTGTGTTTTTTGCGTTTGCCACATGTCTTAGGTGC
AGAGTGTGCGGCCCACACTTTCGCCATGGTACCGCACGCTTTTGCTGCAG
TGTAGGCGGGACAATCTCCTCAGATTCGGTTTGCCGTTCTAAAAGAAATT
ATGCTGCGTTATGCCGTGTTTTGTTAGTCTAAGCACTGCACAGAGGATAG
CTTGCTGTTGTTTTTTTGTCCCCCCCCACCCCCGATTGCATGAAGGTTCA
GTGTCCTAGTTCCCTCCCCCCTTTAAAAAAGACATAAAAGTTGGCCGAGA
CCTCTCTGGCTGATGAGCCTAAGGCATGGTTTTGTGTAGGGCCCCTATGC
TTGCTCTCTGGGGATTAGACCTCTACCTTCACCCATGAGGATGGCTTGTC
GTCTCTTTCATCCGGCCCTCCACTACCCTTTCCCCGTTCTTTTGATGCAT
CCGCCGCTTGTAAATATCTTTCTCCCTAACATTCGCTTGCTTTTTTCCGC
CCGGCATTTCTTGTTTTTCCCCCCTGTTTCCCTACCCCCTTTATACCGTC
TCCTTCCCCTTTCTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_f17.b1 MSMg01no127_f17.b1 CHROMAT_FILE:
MSMg01no127_f17.b1 PHD_FILE: MSMg01no127_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:04 2005
         (277 letters)



>mm_chr10_105613064_105613743
          Length = 680

 Score =  460 bits (238), Expect = e-134
 Identities = 265/276 (96%), Gaps = 5/276 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttttccttgtccattatgaaaattgcagtctgtgactttgttaaatgcataat 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaattccttttccttgtttattatgaaaattgcagtctgtgactttgttaaatgcataat 420

                                                                       
Query: 65  gtgccaacatattaatccaggtaacaatatcaaacaaat----aaaaaaaaaagaaagaa 120
           |||||||||||||||||||||||||||||||||||||||    |||||||||| |||| |
Sbjct: 419 gtgccaacatattaatccaggtaacaatatcaaacaaatgaaaaaaaaaaaaaaaaagga 360

                                                                       
Query: 121 aaggaaaatggcttcatatccctaaggtgtataggtgctgtgacccataatccactggaa 180
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 359 aaggaaaatggcttcatatccctaaggtgtgtaggtgctgtgacccataatccagtggaa 300

                                                                       
Query: 181 gagtcgaatgaatactcaattttgtttccaactaaaaagataatctgtcaagagatttct 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 299 gagtcgaatgaatactcaattttgtt-ccaactaaaaagataatctgtcaagagatttct 241

                                               
Query: 241 attcttatcacttttagtgactgactgttcactcta 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 attcttatcacttttagtgactgactgttcactcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 680
Length adjustment: 9
Effective length of query: 268
Effective length of database: 671
Effective search space:   179828
Effective search space used:   179828
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)