Query= MSMg01no127_l24.b1 MSMg01no127_l24.b1 CHROMAT_FILE:
MSMg01no127_l24.b1 PHD_FILE: MSMg01no127_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:36 2005
(344 letters)
>mm_chr10_31187208_31187951
Length = 744
Score = 619 bits (320), Expect = 0.0
Identities = 338/344 (98%)
Strand = Plus / Plus
Query: 1 ttgggcttgattttcaagatttattttatttttattttatgtatatgtgtatacccgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ttgggcttgattttcaagatttattttatttttattttatgtatatgtgtatataggcca 260
Query: 61 cgtctgcggcagtgcccaaggaagcagaggaggccactggatcccctagagctggagtca 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgtgcggcagtgcccaaggaagcagaggaggccactggatcccctagagctggagtca 320
Query: 121 caggctgctgtgagctgcctcaggaaacgaaactccgagtgtctgagccatctcgtcatc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 caggctgctgtgagctgcctcaggaaacgaaactccgagtgtctgagccatctcatcatc 380
Query: 181 cctagcacagtttttaacggagaacaaggaaggggagctacttttgctctgtgctgtctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctagcacagtttttaacggagaacaaggaaggggagctacttttgctctgtgctgtctt 440
Query: 241 tcctgggtgtctagtgtttcctaacagtatactcagctctcaacatcattttgaccttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgggtgtctagtgtttcctaacagtatactcagctctcaacatcattttgaccttcc 500
Query: 301 atttgtagctgctgagagttcaaggtagactgcatggactttcc 344
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgtagttgctgagagttcaaggtagactgcatggactttcc 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_l24.g1 MSMg01no127_l24.g1 CHROMAT_FILE:
MSMg01no127_l24.g1 PHD_FILE: MSMg01no127_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:36 2005
(506 letters)
>mm_chr10_31347682_31348587
Length = 906
Score = 847 bits (438), Expect = 0.0
Identities = 488/508 (96%), Gaps = 7/508 (1%)
Strand = Plus / Minus
Query: 1 agagttattatttcaactattctttctgtttcaacagtgacacttgggttcttaaaaata 60
||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||
Sbjct: 546 agagttattatttcaactattctctctgtttcaacagtgaaacttgggtccttaaaaata 487
Query: 61 aataagattaagaaataaactaacgtgagaaatatttatttggcatttattctcttactt 120
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 486 aataagattaagaaataaactaacgtgagaagtatttatttggcacttattctcttactt 427
Query: 121 aaaggattctacaaaatttgccctatattctaatgaattgacaacttaacaaaaatatat 180
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 426 aaaggattctacaaaatgtgccctgtattctaatgaattgacaacttaacaaaaatatat 367
Query: 181 cacaactttgtatgaaaattagaaaaacggttgaccagaaaatttggaaacattttaaaa 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 366 cacaactttgtatgaaaattagaaaaaaggttgaccagaaaatttggaaacattttaaaa 307
Query: 241 gaaaaattgtttagtttactatttatttcaccagggaacataactattatctatcattaa 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaaagattgtttagtttactatttatttcaccagggaacataactattatctatcattaa 247
Query: 301 tttttctagagttaaaatttcttctccaatctatcaaattatgttacg---ccccaatga 357
||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 246 attttctagagttaaaatttcttctccaatctatcaaattatgttaggttt----aatga 191
Query: 358 actcacaaagtcccagcaccctcaggatactcagaaccatcagtaactccagttccaggg 417
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 aatcaaaaagtcccagcaccctcaggatactcagaaccatcagtaactccagttccaggg 131
Query: 418 catcatatgacttcctctggcctccataggcaccagtcacacacacattttacataatat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 catcatatgacttcctctggcctccataggcaccagtcacacacacattttacataatat 71
Query: 478 aaatataaaattacctaattatataaaa 505
||||||||||||||||||||||||||||
Sbjct: 70 aaatataaaattacctaattatataaaa 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
