Query= MSMg01no128_b03.b1 MSMg01no128_b03.b1 CHROMAT_FILE:
MSMg01no128_b03.b1 PHD_FILE: MSMg01no128_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:02 2005
(405 letters)
>mm_chr10_121238551_121239352
Length = 802
Score = 629 bits (325), Expect = 0.0
Identities = 381/401 (95%), Gaps = 4/401 (0%)
Strand = Plus / Plus
Query: 5 gaattctctgacttccctgaggtgactggagcatcttttctctcctctcgtgatgtgcat 64
||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||
Sbjct: 205 gaattctctgacttctgtgaggtgactggaacatcttttctatcctctcttgatgtgcat 264
Query: 65 tcatttcatttctatatgggaatcatgtttttattatcctgtttttcgaaactttaacat 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 tcatttcatttctatatgggaatcatatttttattatcctgtttttcgaaactttaacat 324
Query: 125 cgcccaccactatctgccttcagaggtttgctaacagaagattttgaccataaataccaa 184
| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cac---ccactatctgccatcagaggtttgctaacagaagattttgaccataaataccaa 381
Query: 185 cctgatagtacttgaaaaacccacttgtagagccagtgggacaagggtaactgctatatt 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 382 cctgatagtacttgaaaaacccacgtgtagagccagtgggacaagggtaactgctgtatt 441
Query: 245 actgactcagtgtttaaaaagaatgatgctgggctagggagatggatcggtgtgcaagca 304
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 442 actgactctgtgtttaaaaagaatgatgctgggctagggagatggatcagtgtgcaagca 501
Query: 305 tgaggaccggagtgtgagtccctagcacccactgaacagtccaggccatgtctctgtgct 364
||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 502 tgaggactggagtgtgagtccctagcacccactgaacag-ccaggccatggctctgtgct 560
Query: 365 cctgtaccccagtgacaggaaagtaggggtttgctgcctgc 405
|||||||||||||||||||||| |||||| |||||||||||
Sbjct: 561 cctgtaccccagtgacaggaaaataggggcttgctgcctgc 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 802
Length adjustment: 9
Effective length of query: 396
Effective length of database: 793
Effective search space: 314028
Effective search space used: 314028
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_b03.g1 MSMg01no128_b03.g1 CHROMAT_FILE:
MSMg01no128_b03.g1 PHD_FILE: MSMg01no128_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:02 2005
(438 letters)
>mm_chr10_121333828_121334665
Length = 838
Score = 267 bits (138), Expect = 1e-75
Identities = 147/150 (98%), Gaps = 2/150 (1%)
Strand = Plus / Minus
Query: 288 ttcatgaaccaggagagtccatcacctctaactctgctgctcgggcaggaagtcaccaca 347
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 636 ttcatgaaccaggagagtccatcacctctaactctgctgctcgggc-gggagtcaccaca 578
Query: 348 gaattcctgattgtgttgaggaggaaaactggttgctcagattctccctttttagctc-t 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 577 gaattcctgattgtgttgaggaggaaaactggttgctcagattctccctttttagctctt 518
Query: 407 tttttttttcttccatttatttccctatcg 436
||||||||||||||||||||||||||||||
Sbjct: 517 tttttttttcttccatttatttccctatcg 488
Score = 120 bits (62), Expect = 2e-31
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 146 ttcatgaaccaggagagtccatcacctctaactctgctgctcgggcaggaagtcaccaca 205
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 636 ttcatgaaccaggagagtccatcacctctaactctgctgctcgggcggga-gtcaccaca 578
Query: 206 gaattcctga 215
||||||||||
Sbjct: 577 gaattcctga 568
Score = 118 bits (61), Expect = 7e-31
Identities = 67/69 (97%)
Strand = Plus / Minus
Query: 76 ttcatgaaccaggagagtccatcacctctaactctgctgctcaggcgggggtcaccacag 135
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 636 ttcatgaaccaggagagtccatcacctctaactctgctgctcgggcgggagtcaccacag 577
Query: 136 aattcctga 144
|||||||||
Sbjct: 576 aattcctga 568
Score = 118 bits (61), Expect = 7e-31
Identities = 67/69 (97%)
Strand = Plus / Minus
Query: 6 ttcatgaaccaggagagtccatcacctctaactctgctgctcacgcgggagtcaccacag 65
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 636 ttcatgaaccaggagagtccatcacctctaactctgctgctcgggcgggagtcaccacag 577
Query: 66 aattcctga 74
|||||||||
Sbjct: 576 aattcctga 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 4
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
