BAC Information

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BAC

Clone NameMSMg01-128H14
Chromosome10 (Build37)
Map Location 42,145,298 - 42,302,885
singlet/doubletdoublet
Overlap geneLace1, Snx3, Nr2e1
Upstream geneLOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a, LOC666540
Downstream genec222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128H14.T7 (MSMg01no128_h14.b1)MSMg01-128H14.TJ (MSMg01no128_h14.g1)
ACCAG336733AG336734
length748706
length of high quality
(start - end)
135 (60 - 194)256 (57 - 312)
definitionCHROMAT_FILE: MSMg01no128_h14.b1 PHD_FILE: MSMg01no128_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:35 2005CHROMAT_FILE: MSMg01no128_h14.g1 PHD_FILE: MSMg01no128_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,145,298 - 42,145,432)(42,302,630 - 42,302,885)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTA
TGTCCACTTCAAAACAAGTTATTCAAATATTATAGTCTTAAAACTGTAAG
GGAAAAATGAAAGCCATTTGTCTCATTTGAGATCAGTTTATGTGCGGCAG
CGATAGGCAGACAAATGCCTCCGCTGATTGGATGGTCCTAAGGTTGAAGA
GCAGAACAGGGCATATACAGGAAATCGGCCTGGGAAGTGCACATCTTGTC
CAGCACATCTGATCAGAGCGTTCTCTCATCTCCAACCCAAAACTCAAGCC
ATTCCTGCTTATTCATGATATTCAGACCAAACGCTATATTGTACTGGTAG
GTTAGCCCAAAGGTTCATTTCCCCATTCCTCTCCTACCCTCTCTCTTTTG
TCTTTCCCCCCCTTTCCCTTCCCCTTCCCTTTTTTTCCTCTACCCTCCCT
TTTTTCTTTTTCCTTTCGCCTCCCCTTTCCCCCTTTTTCCCCTTCTCCTT
TTTCTTTCTTTTCCCCCCTCTCCCCCCCCTTTTCCTCCCTTTCCCTTTTT
CTCTTTCTTCCTCTTTTATCTCCCCCCTTCGCCTTCCTTTCTCCTTCATA
GATCCCCCCCTATTCTCTCCTTACCTTTTTCTTCCCTTTTCCTCCCCGTT
TTAATTTACCCGCCCTTTTTTCTTTCACCTTCCCCTCATCCCCTTCACCT
TCTTTTTAACACTTCGCCTTTTTTCCTTTTCTCCCCCCTTTTCTCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGAGCGCCGGGGAGAGCAGGGCAGCGCACAACCAATAGCCACCT
GTCTGTCCCGCCCGGGAGCCTCGCAGGCTGGAGGGCGGCTGGAGAGCGGC
GGCGGCCGGCGGCGACGTGGGCGCCGTGGGTCGGGAATCCGGCAGTGCCC
ACCAACCGCTGCGCCCCGGGACCGCCAGCATGAGCAAGCCCGCCGGATCA
ACAAGTGGGTACCGCTCGGGCAGCCGCGGGGTCCTGGCGCGTGGCCTGGG
GAGGGCAGGCTGGTAGGCCTGTATGGTCCTTCTGAGAGCTCTGAATTTGA
GCCCCATAGTAATACTCTCTCGGTCTTGTATGTCCGTTGGCCTACCACCC
TTATACTGTTGCGTTGGAGCGCTTCGTGCAACTGTGAGAGCAATTTCCTC
GCTCCTGGATGCTAGTTCTTCCGGGTTTCCCCGGTGTATCTTGAATGTTG
CGACTTGTGGCAGCCCACCGGTCCCGTCTGTCTGTTTCTATTTATCTGCA
CCTGCCGAACGTGGGAGCGCTGATTTCACGGCGGGAACTGCCCCTCAGTT
CCTGGTGTTTGCACAATACCCCACTCCCTTTTTATCTCAGAGCTTGCATT
GCTCAAACGCCATTTTGCTCACAGTTGACTTTCCAACTGTACGTTCTTGC
TCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_h14.b1 MSMg01no128_h14.b1 CHROMAT_FILE:
MSMg01no128_h14.b1 PHD_FILE: MSMg01no128_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:35 2005
         (135 letters)



>mm_chr10_42145098_42145632
          Length = 535

 Score =  215 bits (111), Expect = 1e-60
 Identities = 129/135 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaacaagttattcaaatattatagtcttaaaactgtaagggaaaaatgaaagccattt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 caaaacaagttattcaaatattatagtcttaaaactgtaagggaaaaatgaaagtcattt 260

                                                                       
Query: 61  gtctcatttgagatcagtttatgtgcggcagcgataggcagacaaatgcctccgctgatt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 261 gtctcatttgggatcagtttatgtgcggcagcgataggcagacaaatgcatccgatgatt 320

                          
Query: 121 ggatggtcctaaggt 135
           ||||| |||| ||||
Sbjct: 321 ggatgatcctgaggt 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 535
Length adjustment: 8
Effective length of query: 127
Effective length of database: 527
Effective search space:    66929
Effective search space used:    66929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no128_h14.g1 MSMg01no128_h14.g1 CHROMAT_FILE:
MSMg01no128_h14.g1 PHD_FILE: MSMg01no128_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:35 2005
         (256 letters)



>mm_chr10_42302430_42303085
          Length = 656

 Score =  495 bits (256), Expect = e-144
 Identities = 256/256 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagcgccggggagagcagggcagcgcacaaccaatagccacctgtctgtcccgcccggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgagcgccggggagagcagggcagcgcacaaccaatagccacctgtctgtcccgcccggg 397

                                                                       
Query: 61  agcctcgcaggctggagggcggctggagagcggcggcggccggcggcgacgtgggcgccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agcctcgcaggctggagggcggctggagagcggcggcggccggcggcgacgtgggcgccg 337

                                                                       
Query: 121 tgggtcgggaatccggcagtgcccaccaaccgctgcgccccgggaccgccagcatgagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgggtcgggaatccggcagtgcccaccaaccgctgcgccccgggaccgccagcatgagca 277

                                                                       
Query: 181 agcccgccggatcaacaagtgggtaccgctcgggcagccgcggggtcctggcgcgtggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agcccgccggatcaacaagtgggtaccgctcgggcagccgcggggtcctggcgcgtggcc 217

                           
Query: 241 tggggagggcaggctg 256
           ||||||||||||||||
Sbjct: 216 tggggagggcaggctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)