BAC Information

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BAC

Clone NameMSMg01-128H24
Chromosome10 (Build37)
Map Location 6,295,815 - 6,296,048
singlet/doubletsinglet
Overlap geneMthfd1l
Upstream geneSyne1, Esr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12
Downstream genePlekhg1, Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128H24.T7 (MSMg01no128_h24.b1)MSMg01-128H24.TJ (MSMg01no128_h24.g1)
ACCAG336753AG336754
length874754
length of high quality
(start - end)
235 (48 - 282)337 (76 - 412)
definitionCHROMAT_FILE: MSMg01no128_h24.b1 PHD_FILE: MSMg01no128_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:37 2005CHROMAT_FILE: MSMg01no128_h24.g1 PHD_FILE: MSMg01no128_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCGCGCGG
AATTCAGGCTGACTTCCCAATTCTTTGTGCAGTCTACCCTGACCTCAATT
TTCTAATCCTCCTGTCTTTGTCTCTCCGGGATCACAGGTGCCCATACCCC
CATACTCAGGAATAAGACAACACACTACAGCACACTTGTGTGCTCATGAG
AGTCAGAGAGAGAAAGAGTTCAGGCTATGGGGACAGGGTCAGGGGAGGGT
GGAGGGTGGCATAGAAGGGTTAGGGAGGGGCAGGTTTGGCACCTTCAGGG
TTCCGTTCCATGTTCTACTGCCCCCTTTCTTCCTCTGTTGAACATTCCCC
CAGCCCATTCCCTTTATTTATCCCGACTTATCCCCAGCTCTATTTCCTTT
GTCACTGTCTCTTTTCGCCTTTTCCCCCCCTTTTTCTCTATCTTGTGGTT
TCCCCGACCCCTTATCTGTTTTTGTCATCTATCACCTTCCTATTTTTTAT
TAATTTGCTTTTTCCCCACACTCTTTCCCTGCCTTCTTCCCCCTTCTCAT
GTTTCTCCTTTCCTTTTCCCCTCTTTGCCCCCCCCCGCAATATCCACGGC
TTCCCGCTTTCTTCCTCTTCATTTCTCCCATGTTATTTTTGCCCCCCTTT
CCCCTCAGTTTTTTTTCCATTTTTACATATCTCGCCCCTTAATTAACCTT
CCAGTCTCTGTCTCTTCTTGCCTCATCTCCACGCACCTCCGCAATTTATT
TATTGACCGCACCTGTTTCATCCTATTCGACCTTTATCGCCTCTATCCCC
ACATCATGCCTTCTGTTATCCTCCCCTATCCTCTCTTTATTTCCTCTTTT
CTCCACCCCGTCTTTGTTCCCCCC
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGGTGGACTCCAGAAAATCAA
ATAACCCCGTTAAAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCACCT
GAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTT
AATCATCAGTGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGCCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGAAACACTCCTCCATTGTTGGTGGGATTGCAGGCT
TGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACA
TAGTACTACCGGAGGATCCCGCAATATCTCTCCTGGGCATATATCCAGAA
GATGTCCCAACCAGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTGTAATAGCCATAAGCTGGAAAGAACCCAGATGCACCTCAACAG
AGGAATGGATACAGAAAATGTGTAACATTTACACAATGGAGTACTACTCA
GCTATTAATAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCT
GAAGGGCATCATCCTGAGCGAGGTAACCCAATCACAAAAGAACTCACATG
ATATGTACTCACTGATAAGCGGATATTAGCCCAGAAACCTAGAATACCCA
ATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_h24.b1 MSMg01no128_h24.b1 CHROMAT_FILE:
MSMg01no128_h24.b1 PHD_FILE: MSMg01no128_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:37 2005
         (235 letters)



>mm_chr10_6295613_6296248
          Length = 636

 Score =  381 bits (197), Expect = e-110
 Identities = 225/237 (94%), Gaps = 7/237 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcaggctgacttccc--aattctttgtgcagtctaccctgacctcaattttctaat 60
           ||||||||||||||||     |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaggctgactt---ggaattctttgtgcagtctaccctgacctcaattttctaat 259

                                                                       
Query: 61  cctcctgtctttgtctctccgggatcacaggtgcccatacccccatactcaggaataaga 120
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 260 cctcctgtctttgtctctctgggatcacaggtgcccatacccccatacccaggaataaga 319

                                                                       
Query: 121 caacacactacagcacacttgtgtgctcatgagag--tcagagagagaaagagttcaggc 178
           ||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||
Sbjct: 320 caacacactacagcacatttgtgtgctcatgagagagtcagagagagaaagagttcaggc 379

                                                                    
Query: 179 tatggggacagggtcaggggagggtggagggtggcatagaagggttagggaggggca 235
           |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 380 tatggggacagggtcaggggagggtggaggatggtatagaagggttagggaggggca 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 636
Length adjustment: 9
Effective length of query: 226
Effective length of database: 627
Effective search space:   141702
Effective search space used:   141702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)