Query= MSMg01no128_j22.b1 MSMg01no128_j22.b1 CHROMAT_FILE:
MSMg01no128_j22.b1 PHD_FILE: MSMg01no128_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:46 2005
(482 letters)
>mm_chr5_14859298_14860180
Length = 883
Score = 872 bits (451), Expect = 0.0
Identities = 472/483 (97%), Gaps = 9/483 (1%)
Strand = Plus / Plus
Query: 5 gaattctacgtggtttac----cacatcagttttgctgtaatttacaatagtgaagagtg 60
||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacgtgg----caaagcacatcagttttgctgtaatttacaatagtgaagagtg 260
Query: 61 aagataatagtaggttaaaa-tgaaattgtatttatccagaaataaaataaaaattagag 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagataatagtaggttaaaaatgaaattgtatttatccagaaataaaataaaaattagag 320
Query: 120 actggatattaaagaagaatgttaacccacaaaatatgtaccttggttgaaaacattaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggatattaaagaagaatgttaacccacaaaatatgtaccttggttgaaaacattaca 380
Query: 180 gcctccataattttcatcaagtcaaggtgttctcaattgtacacaacaaggtacctagat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctccataattttcatcaagtcaaggtgttctcaattgtacacaacaaggtacctagat 440
Query: 240 taatttgtgtgccctaagaaaagggttgcttgttctctgagtaactgctattacatgtat 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 taatttgtgtgccctaagaaaagggttgcttgttctctgaggaactgctattacatgtat 500
Query: 300 catattgcttatttcctttctcttgcataatgtactgtcagagacgtaaaattattgttc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catattgcttatttcctttctcttgcataatgtactgtcagagacgtaaaattattgttc 560
Query: 360 tgcagacaaactatatttgtcatataacattgattaaactcttgtcatttcctgattttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcagacaaactatatttgtcatataacattgattaaactcttgtcatttcctgattttc 620
Query: 420 catgttttttctctaaacgcaatgcctacataatgaaaactctgatatcaattctcttat 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 catgttttttctctaaacgcaatgcctacataatgaaaattctgatatcaattctcttat 680
Query: 480 tct 482
|||
Sbjct: 681 tct 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_j22.g1 MSMg01no128_j22.g1 CHROMAT_FILE:
MSMg01no128_j22.g1 PHD_FILE: MSMg01no128_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:47 2005
(501 letters)
>mm_chr10_43958391_43959291
Length = 901
Score = 224 bits (116), Expect = 8e-63
Identities = 143/152 (94%)
Strand = Plus / Plus
Query: 1 caagtcctccaaattcagaaagagagttaccaggttgacagcttgccagggcacatcttg 60
|||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 201 caagtcctccaaatgcagaaagagagttaccaggttgacggcttgccaggacacatcttg 260
Query: 61 tgtggttgttgcaaagagttatgtaaatacaacagcaacaacatatgctcaaatgagggt 120
|||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||||||
Sbjct: 261 tgtggttgctgcaaagagtcatgcaaatgcaacagcaacaacatatgctcaaatgagggt 320
Query: 121 aaaatagttttagaatccatgtgaattcaatg 152
||||||||||||||||| ||||||||| ||||
Sbjct: 321 aaaatagttttagaatctatgtgaatttaatg 352
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
