Query= MSMg01no128_o21.b1 MSMg01no128_o21.b1 CHROMAT_FILE:
MSMg01no128_o21.b1 PHD_FILE: MSMg01no128_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:11 2005
(457 letters)
>mm_chr10_89003602_89004460
Length = 859
Score = 783 bits (405), Expect = 0.0
Identities = 440/453 (97%), Gaps = 5/453 (1%)
Strand = Plus / Plus
Query: 7 gaattccctactttatc-ccgaccacgtggatgcttctctcctctgtgttccc-aagaac 64
||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 207 gaattccctactttaacacagaccacgtggatgcttctctcctctgtgttcccaaagaac 266
Query: 65 gccaccacgctcagaactttattgaaactatttatttccttatctgtcttccccactagc 124
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 accaccatgctcagaactttattgaaactatttatttccttatctgtcttccccactagc 326
Query: 125 taacatctccataaagctgagtactgtgtgtcactgctgctattgtttctcatctggccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taacatctccataaagctgagtactgtgtgtcactgctgctattgtttctcatctggccc 386
Query: 185 ctaatcttaaaagagcaccatgtctgtccccaggaactcaatggatctctataaataagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctaatcttaaaagagcaccatgtctgtccccaggaactcaatggatctctataaataagt 446
Query: 245 aaaaaaacaatgaattgcatgtaatatataaacagctctacaaatcattaatagaccaac 304
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 447 aaaaaaacaatgaattgcatgtaatatataaacagctctacaaatcagtaagagaccaac 506
Query: 305 aacagaagaaaaattgaataaggtccatgtgatggtttgagtaggaatgcccccccccct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 507 aacagaagaaaaattgaataaggtccatgtgatggtttgagtaggaatgccccccac--- 563
Query: 365 atagactcatgtgtttgaatgcttgccccatagagattggccctattaagtgtggcgttg 424
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 atagactcatgtgtttgaatgcttgccccatagagattggccctattaggtgtggcgttg 623
Query: 425 aagtaggtgtggccttatcggagaaagtgtgtc 457
|||||||||||||||||||||||||||||||||
Sbjct: 624 aagtaggtgtggccttatcggagaaagtgtgtc 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 859
Length adjustment: 10
Effective length of query: 447
Effective length of database: 849
Effective search space: 379503
Effective search space used: 379503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_o21.g1 MSMg01no128_o21.g1 CHROMAT_FILE:
MSMg01no128_o21.g1 PHD_FILE: MSMg01no128_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:11 2005
(302 letters)
>mm_chr10_89175945_89176646
Length = 702
Score = 520 bits (269), Expect = e-152
Identities = 293/305 (96%), Gaps = 8/305 (2%)
Strand = Plus / Minus
Query: 1 tcttttttattggtttgtttgagatagtctcactggctggtccgagac----taccccaa 56
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 645 tcttttttattggtttgtttgagatagtctcactggctggtctgagactatgta----aa 590
Query: 57 ccacagtggcctcaaatgcatagagcttgttctgcctttgccttgtgagtgctagaatta 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ccacagtggcctcaaatgcatagagcttgttctgcctttgccttgtgagtgctagaatta 530
Query: 117 gatgcctagacgtgtacaccatggccagattgggaattcttaaccaaaagattgcctagt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gatgcctagacgtgtacaccatggccagattgggaattcttaaccaaaagattgcctagt 470
Query: 177 gttggtggcagagttacaaatgagatcctattcgaattaaatttaaatttacactaaagt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gttggtggcagagttacaaatgagatcctattcgaattaaatttaaatttacactaaagt 410
Query: 237 agtatttttcaaagttatgagtagctaattcaaggtcctcatctatatcattttacattt 296
||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 409 agtatttttcaaagtcaggagtagctaattcaaggtcctcatctatatcactttacattt 350
Query: 297 tcctt 301
|||||
Sbjct: 349 tcctt 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
