BAC Information

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BAC

Clone NameMSMg01-129C04
Chromosome10 (Build37)
Map Location 127,780,474 - 127,780,942
singlet/doubletsinglet
Overlap geneCs
Upstream geneInhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4
Downstream geneCoq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129C04.T7 (MSMg01no129_c04.b1)MSMg01-129C04.TJ (MSMg01no129_c04.g1)
ACCAG337222AG337223
length691776
length of high quality
(start - end)		443 (73 - 515)225 (184 - 408)
definitionCHROMAT_FILE: MSMg01no129_c04.b1 PHD_FILE: MSMg01no129_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:27 2005CHROMAT_FILE: MSMg01no129_c04.g1 PHD_FILE: MSMg01no129_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCTGTATACAAGCTGGGCTCAAACTTAGAGATCTGCCTGCCTCTG
TCTCCCAGTGCCAGGATCACCCGAGTATACAACTGCCTCCTGGCTTGACA
GGTAGAATTATTAAGAGAATTCTTATTAGTATTACGGGGGTCAGAGTATA
AAAGTGGCCTGACCAAACACTGCAGGCTAGCTTCCAGCATGACCATTGTG
AAACACAGGGTGTAAATGGCTTTAGTTCTCTGACCTGATTCTGGAAACAG
AGGAGTCTTTGTCCTAGGCCAGTTTACTGTTGTTGTTTGTTGGTTGGTTT
TTCTTTCCTTTTTTGGTTGGTGGTGGTTCTTTTTTTAAGTTTCCTTTTCA
AGTTCCTCTGAGACAGGCTTCCATATAACTGAGGCTGGTTTTAAACTGAT
CCTGTTTCTACCTCCCAAGTTCTAAGGTTATAGGTGTGTACTACTGTGGC
TGGTCTTCGGGGACACTAAGGAGGCAGGCGTTTCTATTTATTTTTGAAAT
TAAGTCTCACAATGTAACCCTGGCTGTTGTACAACTTAATGCGTGTGGAC
CAGGCTGCCCTCACACTCACTGTCTCTAGCGCTATGATTAAGGGTGGTGC
CCTCCGCTCCCTGCCTGAATTTATTCTCTTTCATTTTGACA

GGGGGGAAATGGGGGGGAAGAAAGAGCAATATCCTTCTCCCCTTTTTTTN
NNCGACGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTTCTCTGGAA
GAACATGGAGTGCTATTAACCAATGTTTCACCTCTACAACCCCCCAGCCC
CCAGCCCCCACTCTTTCAGACTTGCTATGCAGTCAGGCTGGCCTTACACT
CAGTCGTGTGTCAGCCTACAAATGCTAGGATTGTAGGTGTGGGACAGTGA
GCTGTGGATGATAGCCAGGGCTTTCAGAATGCTGGGTAAGCACTTTACCT
ATCCAGCTGCACCTCTAGCCGTCCAAACCCATGTTTTTGTTCTTTGGGGG
GGGGGGGGGCGGACAGATTTTTTTTATCTACCACCAGGGGGCATCGGTTG
GGATTGGAGGAGTAACACTACTACACCTGAAAAAAATAAATTTCTGGCTT
TCGTGTCCTGCCCACCAATGTTGGAAGTTACTCAAAACTATATCATAATA
ATCCCATTCATTAACTTGATTTCCAGAGACTTGGCCCTCTAACTTCAAGC
TCTTCATTAACTTCCTTCATTATATCTATTCATTACATAATCCCTCCCAA
ATTGGTATCATGCTATTAACGGAAATAATTCCATGAAAATAGAATTAAAA
ACGGTTTTTTTTTTTATTTAAACTCTATGTCTTTTTTTATTATTTAGTAA
CTTTTCAGGCTAAAATAGTATATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_c04.b1 MSMg01no129_c04.b1 CHROMAT_FILE:
MSMg01no129_c04.b1 PHD_FILE: MSMg01no129_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:27 2005
         (443 letters)



>mm_chr10_127780300_127781142
          Length = 843

 Score =  727 bits (376), Expect = 0.0
 Identities = 434/470 (92%), Gaps = 28/470 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaaacttagagatctgcctgcctctgtctcccagtgccaggatcacccgagtatacaa 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||| |||
Sbjct: 175 ctcaaacttagagatctgcctgcctctgtctcccagtgccagggtcacaggagtatgcaa 234

                                                                       
Query: 61  ctgcctcctggcttgacaggtagaattattaagagaattcttattagtattacgggggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ctgcctcctggcttgacaggtagaattattaagagaattcttattagtattacgggggtc 294

                                                                       
Query: 121 agagtataaaa--------------------------gtggcctgaccaaacactgcagg 154
           |||||||||||                          |||||||||||||||||||||||
Sbjct: 295 agagtataaaatctggactactctgctgggtctgtaagtggcctgaccaaacactgcagg 354

                                                                       
Query: 155 ctagcttccagcatgaccattgtgaaacacagggtgtaaatggctttagttctctgacct 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctagcttccagcatgaccattgtgaaacacagggtgtaaatggctttagttctctgacct 414

                                                                       
Query: 215 gattctggaaacagaggagtctttgtcctaggccagtttactgttgttgtttgttggttg 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gattctggaaacagaggagtctttgtcctaggccagtttactgttgttgtttgttggttg 474

                                                                       
Query: 275 gtttttctttccttttttggttggtggtggttctttttttaagtttccttttcaagttcc 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtttttctttccttttttggttggtggtggttctttttttaagtttccttttcaagttcc 534

                                                                       
Query: 335 tctgagacag-gcttccatataactgaggctggttttaaactgatcctgtttctacctcc 393
           |||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 535 tctgagacagtg-ttccacataactgaggctggttttaaaatgatcctgtttctacctcc 593

                                                             
Query: 394 caagttctaaggttataggtgtgtactactgtggctggtcttcggggaca 443
           ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 594 caagttctaaggttataggtgtgtactactgtggcaggccttcggggaca 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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