BAC Information

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BAC

Clone NameMSMg01-129H15
Chromosome10 (Build37)
Map Location 50,845,698 - 50,845,835
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629652, Ascc3, Sim1
Downstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129H15.T7 (MSMg01no129_h15.b1)MSMg01-129H15.TJ (MSMg01no129_h15.g1)
ACCAG337475AG337476
length695699
length of high quality
(start - end)
---159 (206 - 364)
definitionCHROMAT_FILE: MSMg01no129_h15.b1 PHD_FILE: MSMg01no129_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:54 2005CHROMAT_FILE: MSMg01no129_h15.g1 PHD_FILE: MSMg01no129_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTACCTCTATACCAATTTTTTTTAACTCGCTTATTTGATTTGT
CTGGAGTCCACCTTTTTGAGATCTTTGAATATATTGGATATTAGCCCCCT
ATGACATTTAGTATTGATAAAAATTCTTCCCCAATCTGTTGGAGATCTTT
TTGACTTATTGACAGCATCTTTTGCCCTACAAAAACTTTGCGATTTTATG
AGGGCCCATTTATCGATTTTTGATCTTACAGCACAGGCCATTGCTGTTCT
ATTCAGGAAATTTTCCCCTGTGCCCAAATCTTCAAGGGTTTTCCCCAATT
ACTCCTCTATAAATCTCAGAGTCTCTGGTTTTATGGGTAGGACTTTGATC
AACTTACACGACAGCTTTATACGAGGAGATAAGAAAGGATCGATTCACAT
TCTGCTACATGATAACCACCGATTGCGCCAGCCCCATTTGTAGACAACGA
TGCCTTTCTTCCACTGGATGGTTTTAGCTCCCATTGACCACATTAAGCGA
CCATAGGTCTGTGGGATCATTACTGGCATCTCAATTCTATTCCACTGAGA
TACCTCTCTGCTGGCTGTACCGGTAACAGGCACCTTATATCACCCATGAT
GTGTAACACAGCTTGAGATCATGCTTGATGATTCCCGCAGAGGTC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTTCTGGTCAGATACTCTGAATG
GCCTCACTCATGGGCATTTACCGCAGACTTTTTGAAAATTGATTGCAACC
CCGGCTTGCTTTTATAAAGTTTCAACACGCCGAGCTATATGAAAGATACA
TAGAGAGATAGATAGATAGATAGATAGATAGAGCATTTTATGGTTGTTTT
TATTTAATGCAGCTAGTACATTTTATTAGAATTGCTAGTTTACAGAAGCA
GTTTCTTTTTTGAGATAGCACTTTCATTCACTGTATCTCTTTTAAAGCAG
CTATCACATATTTTGGAGCTTTTAACATTATTTCCAAAAACAATTTCACA
CTGTGCCTAGTTGACACCGATATATATCTAAGAACTTAGTGAAACTCTTA
GCAAACCTATAACTATTCAAAGACTAATAATACATCTGGGTCCTTTCAGC
AAAATCTTGCTAGTGTATGCAATGGTGTCAGCATTTGGAAGCTGATTATG
GTATGGGTCCCTGCATATGGCACTCACTAGATGTTCCATCCCTTCGTCAC
AGCTCCAAAGTCTGCCTTTTGTATCCCCTTCCCTGGGTGTTTTGCCCCCT
TTTCTAAAACGGGGCATAGTGCCCTCACCTTTGGTCTTTCTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_h15.g1 MSMg01no129_h15.g1 CHROMAT_FILE:
MSMg01no129_h15.g1 PHD_FILE: MSMg01no129_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:54 2005
         (159 letters)



>mm_chr10_50845498_50846056
          Length = 559

 Score =  244 bits (126), Expect = 2e-69
 Identities = 135/138 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatagatagatagatagatagatagagcattttatggttgtttttatttaatgcagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agatagatagatagatagatagatagagcattttatggttgttttgatttaatgcagcta 260

                                                                       
Query: 61  gtacattttattagaattgctagtttacagaagcagtttcttttttgagatagcactttc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcattttattagaattgctagtttacagaagcagtttcttttttgagatagcactttc 320

                             
Query: 121 attcactgtatctctttt 138
           || |||||||||||||||
Sbjct: 321 atccactgtatctctttt 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)