Query= MSMg01no129_i15.b1 MSMg01no129_i15.b1 CHROMAT_FILE:
MSMg01no129_i15.b1 PHD_FILE: MSMg01no129_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:59 2005
(674 letters)
>mm_chr10_88136635_88137708
Length = 1074
Score = 1154 bits (597), Expect = 0.0
Identities = 654/683 (95%), Gaps = 18/683 (2%)
Strand = Plus / Plus
Query: 5 ggaattccttaatttgacctagttgacaaattaagacaaatctattcccagtacagaaaa 64
||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 197 ggaattccttaatttgatctagttggcaaattaagacaaatctgttcccagtacagaaaa 256
Query: 65 aggatccttatcttgtatctaagaatcaactcaaaatagattatatataaaacctaaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aggatccttatcttgtatctaagaatcaactcaaaatagattatatataaaacctaaaac 316
Query: 125 taaccagtcctggtgactcaagagacagaggcaagtagatcactttattcaaagcctgtc 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 317 taaccagtcctggtgactcaagagacagaggcaggtagatcactttattcaaagcctgtc 376
Query: 185 cttgtgttctacagagaaattcaatctcagaaaaacaaacaaaaatagacaa-------- 236
||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 377 cttgtgttctacagagaaactcaatctcagaaaaacaaacaaaaatagataaaaaaaaaa 436
Query: 237 ----cctcctccaaacctactagaacctactag-aaaagtttcctgacagtgggttgaac 291
|||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 437 aaaacctcctccaaacctactagaac-----aggaaaagtttcctgacagtgggttgaac 491
Query: 292 agaaatttcctcaatatgaccccaaaacacaagcgcgtgcctttgataccagtgtgtgaa 351
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 492 attaatttcctcaatatgaccccaaaacacaagtgcgtgcctttgataccagtgtgtgaa 551
Query: 352 gaagaactgtgagttccatctaagccagccagggctacaaagtaagatcctatctccaaa 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaagaactgtgagttccatctaagccagccagggctacaaagtaagatcctatctccaaa 611
Query: 412 acaaaatactcatgtctagaatcagaaaattgcaaactaaagccacagtgatcacctaac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acaaaatactcatgtctagaatcagaaaattgcaaactaaagccacagtgatcacctaac 671
Query: 472 attattagattggattagattataaaaagacatttcactgtgatgttaagcccggaacat 531
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 672 attattagattggattagattataaaaagacatttcactgtgattttaagcctggaacat 731
Query: 532 aaattttggcacaccctctgtattgcagcacatgttgagtgaactttcctctgagtacac 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aaattttggcacaccctctgtattgcagcacatgttgagtgaactttcctctgagtacac 791
Query: 592 gacaagaaagtgcttcattgtgaatcagtgtaaacctggtgtcttagtcagggtttctat 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gacaagaaagtgcttcattgtgaatcagtgtaaacctggtgtcttagtcagggtttctat 851
Query: 652 tcctgcacaaacatcatgaccaa 674
|||||||||||||||||||||||
Sbjct: 852 tcctgcacaaacatcatgaccaa 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_i15.g1 MSMg01no129_i15.g1 CHROMAT_FILE:
MSMg01no129_i15.g1 PHD_FILE: MSMg01no129_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:59 2005
(341 letters)
>mm_chr10_88240331_88241071
Length = 741
Score = 582 bits (301), Expect = e-170
Identities = 334/349 (95%), Gaps = 8/349 (2%)
Strand = Plus / Minus
Query: 1 ttcctgttacagca-gcccggcggttcctgtact-------ggaatggtttgcataccct 52
|||||||||||||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct: 408 ttcctgttacagcacgcccggcggttcctgtactgtaataaggaatggtttacataccct 349
Query: 53 ccaggtttacatacatttgtaatttaactactgatgtatctcttttaaagaagaaaaggt 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ccaggtttacatacatttgtaatttaactactgatgtatctcttttaaagaagaaaaggt 289
Query: 113 atttagtgattagagttgaaatgtgtttttattgtggggataaggggttgtatgcttaat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atttagtgattagagttgaaatgtgtttttattgtggggataaggggttgtatgcttaat 229
Query: 173 gtatgagtgctctgtctgcatgtactcctgcatgccagaagagggcatcagatatcctag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gtatgagtgctctgtctgcatgtactcctgcatgccagaagagggcatcagatatcctag 169
Query: 233 atgtcatgggccaccatgtggttgctgggaattgaactcaggacctctagaagaacattc 292
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 168 atgtcatgggtcactatgtggttgctgggaattgaactcaggacctctagaagaacagcc 109
Query: 293 attgctcttaaccatcgagtcatctcagcagtccctatagttgaaatgt 341
||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 108 attgctcttaaccatcgagtcatctcagcagcccctagagttgaaatgt 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
