This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-129K10
Chromosome
10 (Build37)
Map Location
63,978,129 - 64,095,265
singlet/doublet
doublet
Overlap gene
Ctnna3
Upstream gene
Lrrtm3
Downstream gene
LOC665206
,
LOC216036
Link
Open Mouse BAC browser
Click to get alignment info.
name
Ctnna3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:216033
MGI:2661445
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Lrrtm3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:216028
MGI:2389177
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC665206
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665206
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins
pseudo
: _no_value
name
LOC216036
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:216036
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 322 ESTs, 6 Proteins
pseudo
: _no_value
name
Ctnna3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142377931
GeneID:216033
MGI:2661445
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: catenin (cadherin associated protein), alpha 3
transcript_id
: NM_177612.2
name
Lrrtm3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141801863
GeneID:216028
MGI:2389177
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: leucine rich repeat transmembrane neuronal 3
transcript_id
: NM_178678.3
name
Ctnna3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:29243986
CCDS:CCDS23901.1
GeneID:216033
MGI:2661445
definition
GO_component
: GO:0015629 - actin cytoskeleton [Evidence IEA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005916 - fascia adherens [Evidence ISS]; GO:0030027 - lamellipodium [Evidence IDA]
GO_function
: GO:0045296 - cadherin binding [Evidence TAS] [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA] [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA]
GO_process
: GO:0008150 - biological_process [Evidence ND]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0016337 - cell-cell adhesion [Evidence IPI]
codon_start
: 1
exception
: mismatches in translation
note
: alpha-catenin-like protein; catenin alpha 3; alpha T-catenin
product
: catenin (cadherin associated protein), alpha 3
protein_id
: NP_808280.1
name
Lrrtm3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:30520063
GeneID:216028
MGI:2389177
definition
GO_component
: GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
product
: leucine-rich repeat transmembrane neuronal 3 protein
protein_id
: NP_848793.1
name
LOC665206
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665206
definition
number
: 1
pseudo
: _no_value
name
LOC665206
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665206
definition
number
: 2
pseudo
: _no_value
name
LOC216036
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149260920
GeneID:216036
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 322 ESTs, 6 Proteins
product
: similar to Ribosomal protein S6
pseudo
: _no_value
transcript_id
: XR_031902.1
clone name
MSMg01-148P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-393N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378C11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-132E20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-344M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-406D01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-184M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-468M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-177M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-464D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-533F21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-048C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086N02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-357O02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-278A15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-475G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-383F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-485D09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-210B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-329K04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-370A08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-436P22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-424D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-186C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-087G16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-087F15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-083L10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-521G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338A24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-474H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167G08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-518P13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-119B20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-217J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378E04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066H07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-129K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-217B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-156N07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546G05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-534E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514M09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-335A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459G11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-198B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-311A10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-511F15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354H13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-110E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-525O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327H01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-177M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-324E24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-495B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-181H13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-209H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-449E13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532L23
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-175G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514M12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-355P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-134I22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-403P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-306A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459C11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422C21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431G18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-446K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-171F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-116C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-417K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-342E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-081M04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-109O22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-483H16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-074H18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-298C11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-132D07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-251P24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-105H07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-034D23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-223P21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-116G13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-225I10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-186K08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-135J16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-033A08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-077C18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-088I23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-219F02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-073A20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-194C18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-134M16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-137M14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-143H24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-111J04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-268F23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-284H04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-306B02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-170M20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-113K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-052D02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-345L05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-222J01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-160K12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-033K02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-003K14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-148K23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-218G20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259N14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-166O06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-165I01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-047P01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-215I04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-221P24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-286I04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-003M15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-164O01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-089J19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-241A17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-247E10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-254J09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-184L14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-014L08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-218L09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-256G13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-280M15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-092N10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-316M21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-042D11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-323O14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-265M13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-236P09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-059L01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-097M03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-298G21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-250P03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-100D04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-208K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-296D18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-006E03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-341O24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-242P23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-316I15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-198J22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-249B09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-249C10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-136D09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-340E07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-049H17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-139I09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-024A19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-304M17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-320C15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-243H15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-296B19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-037O12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-130D01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-251C14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-064O08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-319B06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-235H04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-044L01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-065L14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-194D02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159N19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-099P19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-131B06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-158I10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-336B01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-308H20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-277J05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-029N23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-180M23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-173J17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-064F03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-176J20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-160M03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-189N05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-251G01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-053F05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-221A24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-326F12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-167M10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-308F16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-052G24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-322B04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-171F02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-274C14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-252M11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-200D16
singlet/doublet
doublet
plural/unique
unique