XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGTATTTTCATGACAGGCTAAGCATCATTTGGAAGAATTAAAAGGT
AATGTTTATGTAGGTTTTTCCCAGCAAAACTATGCCACTCAGTCTGTCAG
TAACAAATAAAAACTCCTCTTTGCAAATGCGTTTTCAACCTTCTTCCCCT
TTATGTAATCATTGTTTTAAATATGGTTCTCTCTGATTTCTCAAGTATTT
CCCTTACTTCATCCCCTATTCCTCTTCTATTGGTCTTATAAAACAAAAAG
TTGATATTTTATTCTAAGTGTACCATTAACCAGTAGCTGAGTTCTTCATT
GATGTGATTTTATTACTCTACACCTAACCTTGCATATGATTTTAGAAGAA
CCTTGGGTATTAAGCTTTATAAAGAGATCATAATATTAGAAAGACTAGCT
TCTTATCATATCTGAAATAGTATATAAGTGGTATAAATGATATAATGCAA
TATATATGTATATATAATTTATCATGTCATATGACATATATCATATATTT
CCTTCATATATATATCAAATAATATTTCTTTTCTAAAATAGATAGATATG
CACCCGAACCTTACACATTAACCATTCACTTTATACTTAGACCTACTATA
TTTGCCACTGATAACTCTCTGAAAAGTGTTCTATATTAAGCTTTCTTCCT
CGTTCTTCTTATCN

CCCCCCCCCTTTCCCCCCCCCCTTCGCGGCCCCTCTTTTAATTTTTNTTN
CCAAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAACCTTGGTAATCAGTTTT
AGTTCCCACTGTCATTCTGGATTTTGGCCCACCTTTGAAACATGGAAAAG
GGCCTAAAGTTTGAAAATATTGGTCTCCATTCATGATAAAAGACACACAC
AAAAGCCATAAAACAACAAGGAATAAAGAATTGTTCTCCTAGAGGAAGAA
TACCCCCTTGAATTTTTTAATAGTGGCAGTACAGATTTCTTCTTTCAAGT
CAACCATCATGTTATATCAATTTTCCTGGTTTTATTAACACATGTTCCTA
TATTCAAGCTTCAATATGTTTTGTTTCGCGCCCAACAAGGCGTGACTCTA
ACTAAGGAAGTGAAAGATCTGTATGATAAAAAATAAAAACTCTGATGAGA
GAGGTTATAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGTAT
TGGCTGGATCAATATTGTAAAAATGTGTATCTTGCCAAAAGTAATCTACA
GAATCAATGCATTTCCCCATTAAAATTCTAACTTCTATTTTTTACCGAAT
TATATACGAGCACATTTGCAAATTTATTTTTGGAAATAACCATACAAACC
TAGGGATAAGCAAAAAATTTCTTTTTCTAAGGATTATTAATGAATCTTTC
TTGGTGGGAAAATACCACATTGTCGCGGTATTCTATAAAAGGTCCTT

Query= MSMg01no129_k10.b1 MSMg01no129_k10.b1 CHROMAT_FILE:
MSMg01no129_k10.b1 PHD_FILE: MSMg01no129_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:08 2005
         (237 letters)



>mm_chr10_63977929_63978565
          Length = 637

 Score =  398 bits (206), Expect = e-115
 Identities = 227/234 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaaactatgccactcagtctgtcagtaacaaataaaaactcctctttgcaaatgcgtt 60
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gcaaaactgtgccactcagtctgtcagtaacaaataaaaactcctttttgcaaatgcgtt 260

                                                                       
Query: 61  ttcaaccttcttcccctttatgtaatcattgttttaaatatggttctctctgatttctca 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaccttcttcccctttatataatcattgttttaaatatggttctctctgatttctca 320

                                                                       
Query: 121 agtatttcccttacttcatcccctattcctcttctattggtcttataaaacaaaaagttg 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 321 agtatttcccttacttcatcccctattcctcttctattggccttataaaacaaaatgttg 380

                                                                 
Query: 181 atattttattctaagtgtaccattaaccagtagctgagttcttcattgatgtga 234
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcttttattctaagtataccattaaccagtagctgagttcttcattgatgtga 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no129_k10.g1 MSMg01no129_k10.g1 CHROMAT_FILE:
MSMg01no129_k10.g1 PHD_FILE: MSMg01no129_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:08 2005
         (234 letters)



>mm_chr10_64094832_64095465
          Length = 634

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttgaaacatggaaaagggcctaaagtttgaaaatattggtctccattcatgataaaag 60
           ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct: 434 ctttgaaacatggaaaaggacctaaagtttgaaaatattggtccccattcgtgataaaag 375

                                                                       
Query: 61  acacacacaaaagccataaaacaacaaggaataaagaattgttctcctagaggaagaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 acacacacaaaagccataaaacaacaaggaataaagaattgttctcctagaggaagaata 315

                                                                       
Query: 121 cccccttgaattttttaatagtggcagtacagatttcttctttcaagtcaaccatcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cccccttgaattttttaatagtggcagtacagatttcttctttcaagtcaaccatcatgt 255

                                                                 
Query: 181 tatatcaattttcctggttttattaacacatgttcctatattcaagcttcaata 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tatatcaattttcctggttttattaacacatgttcctatattcaagcttcaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)