Query= MSMg01no129_m23.b1 MSMg01no129_m23.b1 CHROMAT_FILE:
MSMg01no129_m23.b1 PHD_FILE: MSMg01no129_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:21 2005
(588 letters)
>mm_chr10_13725016_13726002
Length = 987
Score = 1015 bits (525), Expect = 0.0
Identities = 571/593 (96%), Gaps = 13/593 (2%)
Strand = Plus / Plus
Query: 5 gaattccattgtattactatcctttagacattttcccatccatgaatttgggttctttgt 64
|||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 193 gaattccattgtatgaatatcctttagacattttaccatccatgaatttgggttctttgt 252
Query: 65 acaatgaccag----------tac--cattattcacatctgtagggtatagcccaggggt 112
||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 253 acaatgaccaggacttctgtgtacaccattattcacatctgtagggtatagcccaggggt 312
Query: 113 ggggttactacttcaagaactcctgtatcaattctagtatctccttccacttgccttttt 172
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggggttactgcttcaagaactcctgtatcaattctagtatctccttccacttgccttttt 372
Query: 173 aaaaggggagagcagctcccctccttttggcaatgcatgtaggatccagttgcccctctc 232
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaaaggggagagcagcttccctccttttggcaatgcatgtaggatccagttgcccctctc 432
Query: 233 tggcataatacttctggccatctactgattacatataatgtgtggtctttgagacttttc 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 433 tggcataatacttctggccatctactgattacatataatgtgtggtctttgagacttt-c 491
Query: 293 atttgtcttgtgctttatgaagttgagcccttttcacacttattttaatgttggctgctc 352
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 492 atttgtcttgtgctttatgaagttgagccctcttcacacttattttactgttggctgctc 551
Query: 353 tgttttataatgagcccactgaactatttgtcacttttcctattggtcttccatttaaaa 412
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgttttataatgagcccactgaagtatttgtcacttttcctattggtcttccatttaaaa 611
Query: 413 aagcaccactgttaaatgagagaagtattatggaagacctgccaagcactggaattatgg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aagcaccactgttaaatgagagaagtattatggaagacctgccaagcactggaattatgg 671
Query: 473 tggcacagcagctatgtcttatgccctgttgattgggattttgaatgattggctatgcat 532
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tggcacagcagctatgccttatgccctgttgattgggattttgaatgattggctatgcat 731
Query: 533 aggagagttaagatgctaggcagtgggagagctgggcgcgggaaaatacttat 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aggagagttaagatgctaggcagtgggagagctgggcgcgggaaaatacttat 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_m23.g1 MSMg01no129_m23.g1 CHROMAT_FILE:
MSMg01no129_m23.g1 PHD_FILE: MSMg01no129_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:21 2005
(604 letters)
>mm_chr10_13828417_13829419
Length = 1003
Score = 1065 bits (551), Expect = 0.0
Identities = 594/619 (95%), Gaps = 18/619 (2%)
Strand = Plus / Minus
Query: 1 actcatgagtgggtatccaaaacatgcacaaaaccctttcttgtttggtatccaaagagg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 711 actcatgagtgggtatccaaaacatgcacaaaaacctttcttgtttggtatccaaagagg 652
Query: 61 agccttctaaaccctcgggcatgagcatgaaagtgcaaggtgctttggacctgccccgct 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agccttctaaaccctcggacatgagcatgaaagtgcaaggtgctttggacctgccccgct 592
Query: 121 gatctctcgctagcccaagaattttatttttacttcaatctagacatgacattttcgagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gatctctcgctagcccaagaattttatttttacttcaatctagacatgacattttcgagc 532
Query: 181 ctacttagtggccctctttggtttagaaagctaacatataaacttgtgtcctctctgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctacttagtggccctctttggtttagaaagctaacatataaacttgtgtcctctctgaag 472
Query: 241 gaagtatctagtttgtttgcttgctttttttctaggcaaatttttggtcactagcatcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaagtatctagtttgtttgcttgctttttttctaggcaaatttttggtcactagcatcac 412
Query: 301 tgccaccatgaagtacttgttcttttcttctctcagccacatcacaaaaaatattaacac 360
|||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 411 tgccaccatgaagtacttgttcttttcttctctcagccacattaaaaaaaatatgaacac 352
Query: 361 acatctcagaaagggggggatattgcaagaagcatagtaagcactgttaggaatcatttc 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 351 acatctcagaaagggggg-atattgcaagaagcatagtaagcactgttaggaaacatttc 293
Query: 421 caaaattgaatctatttgaactttataatcatgtttggacagcacaactagaaaaactaa 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 caaaattgaatctatttgtactttataatcatgtttggacagcacaactagaaaaactaa 233
Query: 481 ttagtttcaggtctacaaaaaaaaaaaaaaaa-----------------aaggaaaccac 523
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 232 ttagtttcaggtctacaaaaaaaaaaaaaaaagaaaagaaaaaagaaaaaaggaaaccac 173
Query: 524 ccaagtattttcctctttctgaatctttaactatagcatattgattctagaaggttttac 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ccaagtattttcctctttctgaatctttaactatagcatattgattctagaaggttttac 113
Query: 584 aattgcaacagagaaagtg 602
|||||||||||||||||||
Sbjct: 112 aattgcaacagagaaagtg 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1003
Length adjustment: 10
Effective length of query: 594
Effective length of database: 993
Effective search space: 589842
Effective search space used: 589842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
