BAC Information

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BAC

Clone NameMSMg01-129O22
Chromosome10 (Build37)
Map Location 18,156,100 - 18,156,345
singlet/doubletsinglet
Overlap geneNhsl1
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646
Downstream geneHebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129O22.T7 (MSMg01no129_o22.b1)MSMg01-129O22.TJ (MSMg01no129_o22.g1)
ACCAG337815AG337816
length692776
length of high quality
(start - end)
250 (68 - 317)130 (187 - 316)
definitionCHROMAT_FILE: MSMg01no129_o22.b1 PHD_FILE: MSMg01no129_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:31 2005CHROMAT_FILE: MSMg01no129_o22.g1 PHD_FILE: MSMg01no129_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTAGATTCCCTTCTTGGCAGCATCTAGAAACCAATGTCAGGAATCA
GAAACAGATTTGTTTTTTCCCCCCTGGAACAAGTGCATTTCTCAAGTGTG
CTAGCAAGCAGCCATTTGCTTTGGAAGGTCTCTCGCCACCCCCACCCCTT
TGTTTGAGACAGTCTCACTGTCTTAAATTCACATTCCTCCTGCCCTGCCT
CCTCCTGAGCACTGGGATTTTAGGTGAGTACCATACCCAGCCCTTTCTTC
ACTCCAGTCATGATCCATCATTTTTGCATTAAGCATAGCGCCTGTTGCCT
TCTTCGTTTATTTTTACCCCCCCCCCCATGCAGGGTAAGCTAATCAACAC
TGGATTATCACTCTGCGCAAATAAAAAAATATTACTATCACGTAGTCAGA
ATTTGGTTGGTATATAAACTAGCAGTATCTGTGGATGCTTTAAACCATCT
CTCTTAAAGTGCCTCTCATTCCCTCCCTGGATTAAAAACTGCCTGAGAAT
AGCAGCCAGAAATCTATGCCCACCAAGGCGAATTCTTCCCATCTGTAATT
TATATTAATACCTTTTAATAAATACTCTCCTTATGAATCTCAACATTCTA
TTTTATTTTAAAAATATTCTTAAACAAACTTACCCTATTTTA
CTTTCTTTTTTTTCTNCCCCTTTCCCCCCCTTCAATTTTTGTNTTTGATA
ANNNAAAACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTAAGGGTTCCAAG
CCACAAATGCCCAGGTTTCTGATTCTATACATCCGGCAATTTGCATTTCC
AGCAGGCTCCCAGATGAAGCCACTGCTGCTACTCTGGAAACCCAAGGGTA
GAAATCATTTACTTTCAGATCAGCCTGATCTGAAAGTAAATCCTGATCAA
GCACTAATCTCAACTGATCCGTGGGCAGACAGCATGGGATTAGATTACTT
ACAACATTCCAGATCACCCTTCCCAGTTTTACTGTTCTACAATTGGTTCT
TACACATTATAAGACAATGTTTTTTTTCCTCCCCCCCCCCCCAATGAGAT
AGCTATAAACTCATCTTTGTATTTACTAACATAAAAAAAATAAATGATTG
ATTGTATCGTGGTGACCCTTTGACTTGTATTGAAGGAGATCTTACATTTA
TATGGTATTTGCATTCCTTATCATATAATTTTAATGAGGTATTTCCATGA
ATGGCCTCCATAACAGCCTGACTCCTGTGCTTTCATAACCTTCTTGCATT
CATTTGATAGCCAAGCCAGAATAATCTTACGGCACAGGCACTGCCCCATT
AACCATTTTCTAACCGTCTCTCGAAAAATGATTAAGTATACATTACTCTA
AAGGGCACATTTTCCCCATAAATGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_o22.b1 MSMg01no129_o22.b1 CHROMAT_FILE:
MSMg01no129_o22.b1 PHD_FILE: MSMg01no129_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:31 2005
         (250 letters)



>mm_chr10_18155900_18156549
          Length = 650

 Score =  422 bits (218), Expect = e-122
 Identities = 239/250 (95%), Gaps = 8/250 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggcagcatctagaaaccaatgtcaggaatcagaaacagatttgttttttc----cccc 56
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    |   
Sbjct: 201 ttggcagcatctagaaaccaatgtcaggaatcagaaacagatttgttttttctgtgc--- 257

                                                                       
Query: 57  ctggaacaagtgcatttctcaagtgtgctagcaagcagccatttgctttggaaggtctct 116
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 -tggaacaagtgcatttctcaagtgtgctagcaagcagccatttgctttggaaggtctct 316

                                                                       
Query: 117 cgccacccccacccctttgtttgagacagtctcactgtcttaaattcacattcctcctgc 176
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 317 cgccacccccacctctttgtttgagacagtctcactgtcttaaactcacattcctcctgc 376

                                                                       
Query: 177 cctgcctcctcctgagcactgggattttaggtgagtaccatacccagccctttcttcact 236
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cctgtctcctcctgagcactgggattttaggtgagtaccatacccagccctttcttcact 436

                     
Query: 237 ccagtcatga 246
           ||||||||||
Sbjct: 437 ccagtcatga 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)