Query= MSMg01no130_a01.b1 MSMg01no130_a01.b1 CHROMAT_FILE:
MSMg01no130_a01.b1 PHD_FILE: MSMg01no130_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:36 2005
(618 letters)
>mm_chr10_32476160_32477176
Length = 1017
Score = 375 bits (194), Expect = e-108
Identities = 269/296 (90%), Gaps = 8/296 (2%)
Strand = Plus / Minus
Query: 1 gtagagagaccctgtcataaagaatagaaaataataaagtaacatttataatt-aaaata 59
||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 465 gtagagagaccctgtcacaaagaatagaaaataataaaggaacatttataattaaaaata 406
Query: 60 attctttaaaggaaatgcattccacttttaggtaattgattcatctatccagtaggcagt 119
||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 405 attctataagggaaatacattccacttttaggtaattgattcgtctatccagtaggcagt 346
Query: 120 tcttcatggttcctactctattggctttgcatatttttatgtcttttgggttttggc--t 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 345 tcttcatggttcctactctattggctttgcatatttttatgtcttttgggttttggcttt 286
Query: 178 ttttttcccccttgtgcttgcttgct-t-tctttctttctttctttctttctttctttct 235
|||||| |||||||||| ||| || | ||| ||| ||| ||| ||| ||| ||| |||
Sbjct: 285 tttttt---ccttgtgcttactttctctctctctctctctctctctctctctctctctct 229
Query: 236 ttctttctttctttctttctttctttctttctttctttctttctttctttctttct 291
||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ctctctctctctctctttctttctttctttctttctttctttctttctttctttct 173
Score = 163 bits (84), Expect = 5e-44
Identities = 138/160 (86%), Gaps = 9/160 (5%)
Strand = Plus / Minus
Query: 461 ctttct-t-tctttctttctttctttctttctttctttctttctttctttctttctttct 518
|||||| | ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| |||||||
Sbjct: 268 ctttctctctctctctctctctctctctctctctctctctctctctctctctctctttct 209
Query: 519 ttctttctttctttctttctttctttcttttttgcatctttcttgcttctggccactccc 578
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 208 ttctttctttctttctttctttctttcttt-------ctttcttccttctggccactccc 156
Query: 579 tccaaacatctactccatctgtttactaactccattttat 618
||||||||||||||||| ||||||||||||||||||||||
Sbjct: 155 tccaaacatctactccacctgtttactaactccattttat 116
Score = 149 bits (77), Expect = 6e-40
Identities = 92/97 (94%)
Strand = Plus / Minus
Query: 415 ctttctttctctctctctctctctctttctctctctctctctctttctttctttctttct 474
|||||| ||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||
Sbjct: 268 ctttctctctctctctctctctctctctctctctctctctctctctctctctctctttct 209
Query: 475 ttctttctttctttctttctttctttctttctttctt 511
|||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctttctttctttctttctttctttctttctttctt 172
Score = 149 bits (77), Expect = 6e-40
Identities = 92/97 (94%)
Strand = Plus / Minus
Query: 411 ctttctttctttctctctctctctctctctttctctctctctctctctttctttctttct 470
|||||| ||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct: 268 ctttctctctctctctctctctctctctctctctctctctctctctctctctctctttct 209
Query: 471 ttctttctttctttctttctttctttctttctttctt 507
|||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctttctttctttctttctttctttctttctttctt 172
Score = 149 bits (77), Expect = 6e-40
Identities = 92/97 (94%)
Strand = Plus / Minus
Query: 407 ctttctttctttctttctctctctctctctctctttctctctctctctctctttctttct 466
|||||| ||| ||| ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 268 ctttctctctctctctctctctctctctctctctctctctctctctctctctctctttct 209
Query: 467 ttctttctttctttctttctttctttctttctttctt 503
|||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctttctttctttctttctttctttctttctttctt 172
Score = 149 bits (77), Expect = 6e-40
Identities = 92/97 (94%)
Strand = Plus / Minus
Query: 403 ctttctttctttctttctttctctctctctctctctctttctctctctctctctctttct 462
|||||| ||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 268 ctttctctctctctctctctctctctctctctctctctctctctctctctctctctttct 209
Query: 463 ttctttctttctttctttctttctttctttctttctt 499
|||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctttctttctttctttctttctttctttctttctt 172
Score = 134 bits (69), Expect = 3e-35
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 399 ctttctttctttctttctttctttctctctctctctctctctttctctctctctctctct 458
|||||| ||| ||| ||| ||| ||||||||||||||||||| ||||||||||||| |||
Sbjct: 268 ctttctctctctctctctctctctctctctctctctctctctctctctctctctctttct 209
Query: 459 ttctttctttctttctttctttctttctttctttctt 495
|||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctttctttctttctttctttctttctttctttctt 172
Score = 91.6 bits (47), Expect = 2e-22
Identities = 86/99 (86%), Gaps = 4/99 (4%)
Strand = Plus / Minus
Query: 387 ctttct-t-tctttctttctttctttctttctttctttctctctctctctctctctttct 444
|||||| | ||| ||| ||| ||| ||| ||| ||| |||||||||||||||||||||||
Sbjct: 268 ctttctctctctctctctctctctctctctctctctctctctctctctctctctctttct 209
Query: 445 ctctctctctctctttctttctttctttctttctttctt 483
| ||| ||| ||||||||||||||||||||||||||||
Sbjct: 208 -t-tctttctttctttctttctttctttctttctttctt 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 52
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 8
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space: 612256
Effective search space used: 612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| |
