BAC Information

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BAC

Clone NameMSMg01-130D16
Chromosome10 (Build37)
Map Location 45,302,803 - 45,303,403
singlet/doubletsinglet
Overlap geneHace1
Upstream geneLOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364
Downstream geneLOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130D16.T7 (MSMg01no130_d16.b1)MSMg01-130D16.TJ (MSMg01no130_d16.g1)
ACCAG338036AG338037
length730731
length of high quality
(start - end)
621 (65 - 685)601 (64 - 664)
definitionCHROMAT_FILE: MSMg01no130_d16.b1 PHD_FILE: MSMg01no130_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:55 2005CHROMAT_FILE: MSMg01no130_d16.g1 PHD_FILE: MSMg01no130_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCACTTG
GACTGCCGGATCCTTCAACGGCAAAGCTTTTATTGCTTCAACATAAGGAA
GACCCCGAACCCGGACAATGACGCTGCTTATATAGTCCGTAGCGTGACGT
TTCAGCACCTGATTAGTTGCTCGCCCATCACCCCATTACTACGCCCCGAG
ATGGGCAGTGACTGGGTGTGAATTCACTCTTGCACTTGCGAATAAGGCTT
GTTTACTAGTTAGGCGCAGTGGAAGCCAGCGCCATCTTATAATGGCAATT
GCTCACAGCACAGCTCTCCACAGATGGATCTTGAGGTAGATTCCTTCATG
AGGAACCACCATACTGATTACCATAATAGCTATACAAGTTAGCACTCCCA
CCAGCAATATGTGTTTCTTTTACCTCACATCCACACCAGTGTGAGCTGTT
ACTTGTTTTGTTGATCTTAGATATTAGGGGTGCAAAATGAAATCTCAAAG
TAGTTTTGATTTGCATTTCCCTGATGGCTAAGGATGTTGGACATTTTAAG
TGTTTCGCATCCATTTGCATATTTTCTTTAGATGTGTACCCAATTGTTTA
ATTGGGTTATCTGTTTTCTTGATATCTACTTTCTTATTTATTTATTTATT
TATTTATTTATTTATTTATTTATTTATTTATTTATTTGCATTTTGGATAA
ACACTGTGAAGGCTTGAATAAAAATGTCCT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCCAGAAATTCAAGGCCAGCTTGTTGAGATCCAGTCTCACCCACAT
CCCCCAAAAGAAAGATAATATGTTTTGATTATTAAAGTATTATTTGTAGT
TGAAGAATTATATCCACATACTGAATTTGAAATGTTGATTAACAATTGGT
TTTCATGTTTATACTCACAAATAGTAATGAAATGGTAATAAGTTTACTAT
ATATAACTCAGTCCTATATTTCTTAACACATATTTTTTAAACATAATCAT
AATACCATTATCAGCATCAATACAGTTAGCAGTCTTCTTGCTTTTTTCTT
AATTGTTCTTAACCCGTGCATGCTTATTTTTCTTTCTTTCAAAAATGTGT
GTTAGAGCTGGGGATCAAAGCCAGGATCACAGGGCTTCTCTCAGGCTATG
TAAGCAGTCTACTATGGCCAGCATCTCAGCTCTTCAGGTTGGTTTGTTCA
AGTCAGTATTCATGGTCAGCCCGTTATGTTTAGCTGATTCATCTCTCAAG
ATTTAATGTCTCAGGCTTGGTGTGGTGGTGCATGCCTTTAGTCCCAGCAC
TTGGGAGGTAGATACAGGCATATATCTGAATTCACAGCCAGCCTGGTCTA
CCTAGAGAGTTCCAGGATAGCCAGGGCTGTTACACAGAGAAACTCTATTA
CAAACAAACAAAAAACAAAGCACAACCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_d16.g1 MSMg01no130_d16.g1 CHROMAT_FILE:
MSMg01no130_d16.g1 PHD_FILE: MSMg01no130_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:55 2005
         (601 letters)



>mm_chr10_45302603_45303603
          Length = 1001

 Score = 1139 bits (589), Expect = 0.0
 Identities = 598/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaggccagcttgttgagatccagtctcacccacatcccccaaaagaaagataatatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaggccagcttgttgagatccagtctcacccacatcccccaaaagaaagataatatgt 260

                                                                       
Query: 61  tttgattattaaagtattatttgtagttgaagaattatatccacatactgaatttgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgattattaaagtattatttgtagttgaagaattatatccacatactgaatttgaaat 320

                                                                       
Query: 121 gttgattaacaattggttttcatgtttatactcacaaatagtaatgaaatggtaataagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgattaacaattggttttcatgtttatactcacaaatagtaatgaaatggtaataagt 380

                                                                       
Query: 181 ttactatatataactcagtcctatatttcttaacacatattttttaaacataatcataat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactatatataactcaatcctatatttcttaacacatattttttaaacataatcataat 440

                                                                       
Query: 241 accattatcagcatcaatacagttagcagtcttcttgcttttttcttaattgttcttaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accattatcagcatcaatacagttagcagtcttcttgcttttttcttaattgttcttaac 500

                                                                       
Query: 301 ccgtgcatgcttatttttctttctttcaaaaatgtgtgttagagctggggatcaaagcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgtgcatgcttatttttctttctttcaaaaatgtgtgttagagctggggatcaaagcca 560

                                                                       
Query: 361 ggatcacagggcttctctcaggctatgtaagcagtctactatggccagcatctcagctct 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggatcacagggtttctctcaggctatgtaagcagtctactatggccagcatctcagctct 620

                                                                       
Query: 421 tcaggttggtttgttcaagtcagtattcatggtcagcccgttatgtttagctgattcatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaggttggtttgttcaagtcagtattcatggtcagcccgttatgtttagctgattcatc 680

                                                                       
Query: 481 tctcaagatttaatgtctcaggcttggtgtggtggtgcatgcctttagtcccagcacttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctcaagatttaatgtctcaggcttggtgtggtggtgcatgcctttagtcccagcacttg 740

                                                                       
Query: 541 ggaggtagatacaggcatatatctgaattcacagccagcctggtctacctagagagttcc 600
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaggtagatacaggcatatctctgaattcacagccagcctggtctacctagagagttcc 800

            
Query: 601 a 601
           |
Sbjct: 801 a 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)