BAC Information

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BAC

Clone NameMSMg01-130I08
Chromosome10 (Build37)
Map Location 16,924,626 - 16,925,038
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382457, LOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130I08.T7 (MSMg01no130_i08.b1)MSMg01-130I08.TJ (MSMg01no130_i08.g1)
ACCAG338254AG338255
length7101,235
length of high quality
(start - end)
44 (77 - 120)697 (130 - 826)
definitionCHROMAT_FILE: MSMg01no130_i08.b1 PHD_FILE: MSMg01no130_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:21 2005CHROMAT_FILE: MSMg01no130_i08.g1 PHD_FILE: MSMg01no130_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCACTTTGTTCCACTGTAGGAGTGTCAACCACACCTGGCCAC
TAAGTCCTCATTAAGGAAGATACTCTCCTGAGAAGTGGAATCATGAAAAG
CACAATTATGGGTCCATGAGAAAGGATAAATCTAGGTCATGAGTACATCC
AAAAGAAAGTGAGAATTAAGAAAGAATCTTACATGTCCAGTTCAAGAAAT
CAAATCTCTAAGATAAATTAGTAAAATATAAACAAATATAGTTGACCCAA
AGCAATCATGACAAAAGCAAGTGACATATTTTGCTACCTACATTCCAACA
ACTATGAACACAAATGTTTATATTTTCCCCCCCCCCCCCCCACCAACCGG
CTGATTGAATTAAATGGCAACTATCCCACCAATATAATAGAAAATAACAA
TCTCACGTCGCCACCTCCATCCTGCTTCACATGAAACTACACCTATCGGA
ATAATGCAAAGCAAAGCAACGTAGACTAGCTCCACACATCTCTGACATAA
TAGAACTCAAGCCAAACTTACTTATAAGGATATAGTACCCTCCTACACCA
TAATTGATCCTGCACGTGTTCCCCGACTTCCTAATTCTCCCTCCTTCTTC
CTTACCTATCTATTTAACCCATTGCACTCCCTTCCCACCCATTAGAATAC
TTATTCCTTN
CGTTCTCTTNNTAAACATGCGTAGCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGCCCTTTAAGTGCCTCTCTGCTGTCA
CTGTTCGCCTCTCTTTCCTTAAAATGTGTCTGGTACAAGTTTGTTCTTCC
TCCAGTATCCAGGTCTTTTGGAAATTTGATGACAGTAAGGTTTAAGCACA
ATTGAAAAGAGAATCCAAAATGAACTTTCTGCCCCTTCAATCTAACAAAA
GACACAACAACAACAACAACAACAACAAAGGAGCCACCGGAGGCATTGTG
TAATGACTTAGAGCAATGGTTCTCAACCTTCCTAATGCTGCAACCCTCTC
ATACCATTCCTCATGTTGTGGTGACCCACAACTATGGAATTATTTTGTTG
CTACTTTTTATCTGTGATTTTGCTACTGTAACTATCTGATATATGGTATA
CAACCTCTCTGAAAGAGTCATTCAACCCTCACAGGGGTTGAGACCCACAG
GTTGAGAAACACTAACTTAGCGGGTGTGTGCAGCAAAATAGCTAATTTCC
TTGAGAGAAAAAACAAAACAAACAAACAAACAAACAAAAAAAACAACCAA
AAAACAAAAAAACTTTTGGTGTCTGGAGCAGAGGGACTTAACTTTATTTA
CCTGGAGATAATATTCACTAAATAAATGTAGAAATTCAATGGTCTCCATT
GGTTTAAGTAGGTAAATAACTTTTTTTTTTTAACTTTTGAAACTTTTTTT
CAAATGAAAATCTACCTGGGAGTACCTAATGTAAGGCTGCTGACCATTGT
TCTGTTGAGCTAGTCCCTTTTTAGGGATTCTCAGAGAAACACATGCTGCC
TCCTATACTCCTACAGAGTTCCCACATCAGGCTACTCTTTCTTTCTCCCT
AGTGGGCTTTCAAAAACTCAGTAGTAGAGATTTTTGTCTTTTTTGTTGGC
AATACCATGATTAAAGGTTACCCATTGAGTAAGTACCCTAATCATGGAAA
CCGTGTTCTGTCCACCTTCTTCTAAAAACCTAATTGTTGGCCTTAGAACC
AATAAGGGGCAAATCCCAAAATTTTTTCTCTGGACTCAAAAAATTTTCTT
AAAACTAAATTCTTCTCCAGGCTAAAAAAACCCTGTATAATAACCTTCAC
AAAAAATTAAATACCTCTATTTCCCAAACCTCTTCCGCCCCACTGAAGAT
CTTTATATTTGGTTTTTAAGATAGGGATATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_i08.g1 MSMg01no130_i08.g1 CHROMAT_FILE:
MSMg01no130_i08.g1 PHD_FILE: MSMg01no130_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:21 2005
         (697 letters)



>mm_chr10_16923942_16925038
          Length = 1097

 Score =  750 bits (388), Expect = 0.0
 Identities = 409/416 (98%), Gaps = 4/416 (0%)
 Strand = Plus / Minus

                                                                        
Query: 283  ctgtgattttgctactgtaactatctgatatatggtatacaacctctctgaaagagtcat 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 ctgtgattttgctactgtaactatctgatatatggtatacaacctctctgaaagagtcat 1038

                                                                        
Query: 343  tcaaccctcacaggggttgagacccacaggttgagaaacactaacttagcgggtgtgtgc 402
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1037 tcaaccctcacaggggttgagacccacaggttgagaaacactaacttagagggtgtgtgc 978

                                                                        
Query: 403  agcaaaatagctaatttccttgagagaaaaaacaaaacaaacaaacaaacaaacaaaaaa 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  agcaaaatagctaatttccttgagagaaaaaacaaaacaaacaaacaaacaaacaaaaaa 918

                                                                        
Query: 463  aacaaccaaaaaacaaaaaaacttttggtgtctggagcagagggacttaactttatttac 522
            | ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 917  a-caaacaaaaaacaaaaaa-cttttggtgtctggagcagagggacttaactttatttac 860

                                                                        
Query: 523  ctggagataatattcactaaataaatgtagaaattcaatggtctccattggtttaagtag 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  ctggagataatattcactaaataaatgtagaaattcaatggtctccattggtttaagtag 800

                                                                        
Query: 583  gtaaataacttttttttttt-aacttttgaaactttttttcaaatgaaaatctacctggg 641
            |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 799  gtaaataacttttttttttttaacttttgaaactttttt-caaatgaaaatctacctggg 741

                                                                    
Query: 642  agtacctaatgtaaggctgctgaccattgttctgttgagctagtccctttttaggg 697
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740  agtacctaatgtaaggctgctgaccattgttccgttgagctagtccctttttaggg 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)