BAC Information

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BAC

Clone NameMSMg01-130L06
Chromosome10 (Build37)
Map Location 92,167,534 - 92,335,245
singlet/doubletdoublet
Overlap geneNedd1, Gm872, 4930485B16Rik
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814
Downstream geneEG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130L06.T7 (MSMg01no130_l06.b1)MSMg01-130L06.TJ (MSMg01no130_l06.g1)
ACCAG338389AG338390
length721721
length of high quality
(start - end)
313 (47 - 359)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no130_l06.b1 PHD_FILE: MSMg01no130_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:37 2005CHROMAT_FILE: MSMg01no130_l06.g1 PHD_FILE: MSMg01no130_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,334,936 - 92,335,245)(92,167,534 - 92,167,824)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTTGACACTATAGTACAACCTTTTGTCTTAACAATATTAAGACTTCAG
GGACAGAAATTATCTCTATACACATGTACTTGATTCACATGTATTACAAA
ATTTCATATCCCATACCTTCACTGAGCATGTTCCTTGATTTGATAGAGCA
TGTGTATGTGTGTGTGTGCACATGTGCACATGTATGTGTATCTTAGAATT
TTCTGTATATAGCATCATATGCAAATATGCTTTAATGGCTTCACCATCAA
TCATTCCAGGTTTTCTCTTATTCTTTTCTGTTCCCCATGGTCTGTGAAAT
GTTGACTCTTTTTTTTTCCCACACCCACCCCCATCATGTTCTTTTCAAAG
CAAGATTTTTTAAAATCCCCCTATAAAAATAATTCCTGTCTTCTTAGTAA
TGTTTTCCTCTTCCTTATAAGTGGTTGCATTTCCCAGTGTCTGTATCACT
AATTGTACCCACCTTACTCTGGATTCTCTAATTTGTGACTGGCAATCTTG
CTTCCAGACTTGTTTTATGAAAATTCCTCAGGTTTTACTAACCGTACCGG
TTGTTACTACCCCATAGCCCACACGGGTTCTTTGTTCGCCTGATTTTGTT
CACAGCCATCTCCTTTCTTGAACCGAACGATAACTTTTTATTCGCCCTTT
TTTATTTCCAACTTTTCTTTT
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCCGAAAATCTTACATCCACTACAGGTATTTAGAAAA
AAAAATGAAGTAGCAAAGACAGTACATTCACCTGTCACCTCAGCAACTAC
AGACAACTGATTTACCATCTTTGGAGGTGCCTCTTAAGTACCTTTCTGTA
CGTGCATCTGTGCTGAGTGTAATAGAACCCGTACCTGGGATTACATTCCA
CTGCGACACAGTCACCTCAGCAAAATATCTTCTCTTTCATTTTACAGCTG
GATAATATCAATTTATCTCTTCCATGTTCTAACAAATCTATCATTGCTAA
TGTTGACTTGAGATATATTTATATCTCTGTTGCCCAGCACTCTTCAGAGA
TACTAAGATGAGAAGACCACCCCAGCATTTATCTATCTTTGTTCTTATGA
ATTGTCTACTAATTTACCTTGCCTATTTTCTATTAAGATACTAAGAATTT
GTAAGTGCTAATTTGTAGCTGCTCTAAGTAAGGCCATAGATGCTCATATA
GACTGTCAATGCTTTCTCCATTTCTTGCTGTATTGATCTTTTTTCTGACA
GAGAGATGGTCCATAGAAACAGTCTCAAGGCTTCTGGATAAGCCCTTCCA
TTATCAACTCTGTTATTTTAAAAAGAACTGACATCTCACAGTATTTCCCA
GCGAAAAATTACACACCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_l06.b1 MSMg01no130_l06.b1 CHROMAT_FILE:
MSMg01no130_l06.b1 PHD_FILE: MSMg01no130_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:37 2005
         (313 letters)



>mm_chr10_92334541_92335253
          Length = 713

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctgttgacactatagtacaaccttttgtcttaacaatattaagacttcagggacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aattctgttgacactatagtacaaccttttgtcttaacaatattaagacttcagggacag 646

                                                                       
Query: 61  aaattatctctatacacatgtacttgattcacatgtattacaaaatttcatatcccatac 120
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aaattatctctatagaaatgtacttgattcacatgtattacaaaatttcatatcccatac 586

                                                                       
Query: 121 cttcactgagcatgttccttgatttgatagagcatgtgtatgtgtgtgtgtgcacatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cttcactgagcatgttccttgatttgatagagcatgtgtatgtgtgtgtgtgcacatgtg 526

                                                                       
Query: 181 cacatgtatgtgtatcttagaattttctgtatatagcatcatatgcaaatatgctttaat 240
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 525 cacatgtatgtgtatcttagaattttctgtatataggatcatatgtaaatatgcttttat 466

                                                                       
Query: 241 ggcttcaccatcaatcattccaggttttctcttattcttttctgttccccatggtctgtg 300
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 465 ggcttcaccatcaatcattccaggttttctcttattcttttctggtccccatgggctgtg 406

                     
Query: 301 aaatgttgac 310
           ||||||||||
Sbjct: 405 aaatgttgac 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no130_l06.g1 MSMg01no130_l06.g1 CHROMAT_FILE:
MSMg01no130_l06.g1 PHD_FILE: MSMg01no130_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:37 2005
         (291 letters)



>mm_chr10_92167334_92168024
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatccactacaggtatttagaaaaaaaaatgaagtagcaaagacagtacattcacctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tacatccactacaggtatttagaaaaaaaaatgaagtagcaaagacagtaaattcacctg 260

                                                                       
Query: 61  tcacctcagcaactacagacaactgatttaccatctttggaggtgcctcttaagtacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacctcagcaactacagacaactgatttaccatctttggaggtgcctcttaagtacctt 320

                                                                       
Query: 121 tctgtacgtgcatctgtgctgagtgtaatagaacccgtacctgggattacattccactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtacgtgcatctgtgctgagtgtaatagaacccgtacctgggattacattccactgc 380

                                                                       
Query: 181 gacacagtcacctcagcaaaatatcttctctttcattttacagctggataatatcaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacacagtcacctcagcaaaatatcttctctttcattttacagctggataatatcaattt 440

                                                              
Query: 241 atctcttccatgttctaacaaatctatcattgctaatgttgacttgagata 291
           |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctcttccaggttctaacaaatctatcattgctaatgttgacttgagata 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)