BAC Information

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BAC

Clone NameMSMg01-130M03
Chromosome10 (Build37)
Map Location 70,883,732 - 70,884,184
singlet/doubletsinglet
Overlap genenone
Upstream gene1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk
Downstream geneLOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130M03.T7 (MSMg01no130_m03.b1)MSMg01-130M03.TJ (MSMg01no130_m03.g1)
ACCAG338430AG338431
length726714
length of high quality
(start - end)
453 (47 - 499)239 (127 - 365)
definitionCHROMAT_FILE: MSMg01no130_m03.b1 PHD_FILE: MSMg01no130_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:43 2005CHROMAT_FILE: MSMg01no130_m03.g1 PHD_FILE: MSMg01no130_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAAACGCGCGGAA
TTCCTTTCAATAGTGCCTGTTTCTTTAGTTTTGTGCACGAGCATGCTTGA
ACAACGACTTCAAGCTCAACATGGATGCTAACAAGGATGCAACGTGGGGC
ACTGTATCCACACAGCTTACATTCTCAATGACTGTGTCTTAACATTGAGT
TGAAAATGAGAGTTGTGTCCTAAAGGGGCACCAGCACAATGGAAGCGCAC
ATTTGCACACCCACCCACCTGTGAACATTCAAGTGAAGCCAACTCAGGCT
GGAGGTCAGAGTTCTGTGGTCAGCGTCTCCAGGCAGTGGTGGCATGATGA
AGTTCCCCTAAAGGAGATAGGACAAAACTGAAGCCAGAAAACTGTGGGGG
CCATTTGCATAAGCTGCCACCACTAGCAAGATCCCTGTAGGGCTAAGACT
CTAGTAAGTAAAGGAGCAGAAAAGTGTGTGTGTGTGTGTGTGTGCGTGTG
TGTGTGTGCGCCTTCTTTCTCCCTTTTTCTCTTATTCCCCCACCTTTTCT
CACCTTCCTCCCCCTTTTTTTTTCCCCTCCCTTATTTACCCTTTTTTTGT
CCCCCCCATTTTCCCCACTCTTTCCAATAAATACTCCCCAACATTCATTT
CATCCAATTTTTCCCCATATACCCCACATTTTCCCACTTTTTTTTTTTTT
TTCCTCCCCCCCTTTTCCCTCTTCCG
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGTGTATGTGAAGTAAAATGTATCCAAAA
AATTTGTCTGCTCTCTATATTTCGCAAATGTCAGTTGGACTATGGCATAT
TTAAAAAGGAAGGAATCTAAGGTCTGGCAAAATGGCTCAGTGGTTAAGAG
CACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATTCCAGCAACCACATG
GTGGCTCACAACCACCCATAATAAGGTCTGATGCCTTCTTCTGGTTCATC
TGAAGACAACTACAGTGTACTTATTTATAATAATAAATAAATCTTTGAGT
CGGAGTGAGCATGTTTTGAGTGACCTGCGCCCACCAGAGCAAGTAGAGTT
GACCAGAGCGAGCACAGCCCCTAAAATCAATTCCCAACAACCACATTCAT
AAAGGCTCACAACTACAGTGTGTGTGTGTGTGTGTGTGTATGTATATATA
TATATATATATACATATATACACATATATATGTGTATATATATGAGTAGA
GTACTACAGCATACTCATTTACATCAAAAATAAATAAATCTTTAAGACAA
AAAAAGGAAGGAATCATTACATAATGTCCTTTTGATATATTATCTGGTGG
GATTGAATTGTAACACAAGGAAAAAAGTTGAGTAATACTCCAGTCACAAA
TTGGCTTAAGCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_m03.b1 MSMg01no130_m03.b1 CHROMAT_FILE:
MSMg01no130_m03.b1 PHD_FILE: MSMg01no130_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:43 2005
         (453 letters)



>mm_chr10_70883532_70884384
          Length = 853

 Score =  806 bits (417), Expect = 0.0
 Identities = 444/453 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaattcctttcaatagtgcctgtttctttagttttgtgcacgagcatgcttgaacaacg 60
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattcctttcaatagtgtttgtttctttagttttgtgcacgagcatgcttgaacaacg 260

                                                                       
Query: 61  acttcaagctcaacatggatgctaacaaggatgcaacgtggggcactgtatccacacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttcaagctcaacatggatgctaacaaggatgcaacgtggggcactgtatccacacagc 320

                                                                       
Query: 121 ttacattctcaatgactgtgtcttaacattgagttgaaaatgagagttgtgtcctaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ttacattctcaatgactgtgtcttaacattgagttgaaaatgagagtcgtgtcctaaagg 380

                                                                       
Query: 181 ggcaccagcacaatggaagcgcacatttgcacacccacccacctgtgaacattcaagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaccagcacaatggaagcgcacatttgcacacccacccacctgtgaacattcaagtga 440

                                                                       
Query: 241 agccaactcaggctggaggtcagagttctgtggtcagcgtctccaggcagtggtggcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccaactcaggctggaggtcagagttctgtggtcagcgtctccaggcagtggtggcatg 500

                                                                       
Query: 301 atgaagttcccctaaaggagataggacaaaactgaagccagaaaactgtgggggccattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaagttcccctaaaggagataggacaaaactgaagccagaaaactgtgggggccattt 560

                                                                       
Query: 361 gcataagctgccaccactagcaagatccctgtagggctaagactctagtaagtaaaggag 420
           ||||||||||  |  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcataagctgggaggattagcaagatccctgtagggctaagactctagtaagtaaaggag 620

                                            
Query: 421 cagaaaagtgtgtgtgtgtgtgtgtgtgcgtgt 453
           |||||||||||||||||||||||||||| ||||
Sbjct: 621 cagaaaagtgtgtgtgtgtgtgtgtgtgtgtgt 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)