BAC Information

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BAC

Clone NameMSMg01-131C21
Chromosome10 (Build37)
Map Location 126,313,421 - 126,313,618
singlet/doubletsinglet
Overlap geneXrcc6bp1
Upstream geneLrig3, LOC100043547, LOC668336
Downstream geneLOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131C21.T7 (MSMg01no131_c21.b1)MSMg01-131C21.TJ (MSMg01no131_c21.g1)
ACCAG338749AG338750
length711721
length of high quality
(start - end)
213 (327 - 539)109 (141 - 249)
definitionCHROMAT_FILE: MSMg01no131_c21.b1 PHD_FILE: MSMg01no131_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:18 2005CHROMAT_FILE: MSMg01no131_c21.g1 PHD_FILE: MSMg01no131_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGGAGAGCGCGG
AATTCATCGTTTACCTAATAACATATGGATGTCAGGAAAGTTACCACAAT
CGGGCTGGACAGATGGCTCACTGCTTAAGAGCACTGTCTGCACTTCCAGA
GGTCCTGAGTTCAATTCCCAGCAACCACATGGCGGCTCACAACCATCTGT
AAATGGGATCTGATAGCCTCTTCTGGTCTGACTAAAGGCAGCTACAGTGT
ACTCATATAAATGAAATAAATAAATCTTTAAAGAAAAATATAAGGGAAGT
TGCCACGCCTGAGTGACAAGATGAAGAGCATTCTTTATACTACTGGGTTT
TTTTTTCTTCTTCTTCTTCTTCTTCTTTTCTAGGTGTCTGAATTTTTCTA
CAATAAAGCCTTTTTTAACTGGCAGACCCACAGTCTTTGCTGAAACGTCA
TCATTAAGCAATGAGGGAACCTCTGTTTTGTTCATTTCTTCCCTCAGGAG
AAAGAGAGACCGAGGAATGCATCAGACAGTGATCTTACCCTGCTACTATC
AGATCACACTAGCTCTACCATCCAACTTCTCTCATGGAGATAGAAATATC
CAGACAAGATATTACCAAACCTAGTTATTCTCATTAAACTTCAGAGCACC
ACCCTGAGTGCATAATTAATAAATGCTCATTTGTGTTGATAAAAATGTCC
TTGAATTTTTT
CACGATGATGTGTGAGGCCTGGCGGCCGCCTGTTTCAAACATGTGGGTGA
CCTATAGAAGTTACCACAGAAAATTCAGGACCTCTGGAATCCATCTTTGC
AGCCCAGAAATGTTATATTTATCCCCAGAAAAAAAAAATATTTCCGATAG
GATCTCATATATTCCAGGTTGTCCTCCGAATACACAAGGGTAGCCCAAGA
TGATCTTGAATGCCTTGAGTTCGTGTGTGAGTGTGTGTGTGTGTGTGTGT
GTGTGTTTGTGCGTGTGTGTGTGAGTGCATGCCTCATATGTTTCACTCTC
ATAACAATCTGCTCTGATTTTTTTTTTTTAATCCAGCCCCTATACCCGTC
AATACCCGTTTTTTTTTTCCTCCCCCCCTCXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCTAATTCCTTTTAACTTATAGCCTCTTTGTTCATCCTT
ATTTTTATTTATTATTGTCATCAATATATTGCTTTCTTACACTCCATGTG
TCATTTTTCTGTTTAATTTTCTAATCAAACCCTATTTTATTATTTTTATA
GAACCTTTTCTTATTTTTTCTTCTCATGAATTATTATCTCTTTTTATTCT
TTTAATCTTCTTTCTTTAATGATTTACATAAATTAATCTTGTTCTTTTAA
TTATACTCCTCTTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_c21.b1 MSMg01no131_c21.b1 CHROMAT_FILE:
MSMg01no131_c21.b1 PHD_FILE: MSMg01no131_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:18 2005
         (213 letters)



>mm_chr10_126313208_126313820
          Length = 613

 Score =  331 bits (171), Expect = 2e-95
 Identities = 195/211 (92%), Gaps = 13/211 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcattctttatactactgggtttttttttcttcttcttcttcttcttcttttctaggtg 60
           ||||||||||||||| ||||| |||||             ||||||||||||||||||||
Sbjct: 214 agcattctttatactcctggggttttt-------------ttcttcttcttttctaggtg 260

                                                                       
Query: 61  tctgaatttttctacaataaagccttttttaactggcagacccacagtctttgctgaaac 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgaagttttctacaataaagccttttttaactggcagacccacagtctttgctgaaac 320

                                                                       
Query: 121 gtcatcattaagcaatgagggaacctctgttttgttcatttcttccctcaggagaaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcatcattaagcaatgagggaacctctgttttgttcatttcttccctcaggagaaagag 380

                                          
Query: 181 agaccgaggaatgcatcagacagtgatctta 211
           |||||||||||||||||||||||||||||||
Sbjct: 381 agaccgaggaatgcatcagacagtgatctta 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)