BAC Information

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BAC

Clone NameMSMg01-131N06
Chromosome10 (Build37)
Map Location 35,628,144 - 35,724,384
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041585
Downstream geneLOC667860, Hs3st5, Hdac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131N06.T7 (MSMg01no131_n06.b1)MSMg01-131N06.TJ (MSMg01no131_n06.g1)
ACCAG339229AG339230
length742706
length of high quality
(start - end)		141 (73 - 213)628 (79 - 706)
definitionCHROMAT_FILE: MSMg01no131_n06.b1 PHD_FILE: MSMg01no131_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:10 2005CHROMAT_FILE: MSMg01no131_n06.g1 PHD_FILE: MSMg01no131_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(35,724,244 - 35,724,384)(35,628,144 - 35,628,771)
sequence
ACTCATAATTTGCGGCGCTAAACGACTACTAATTCTAAAAAGGCGCGGAA
TTCAGTAGCTTCTCAAAAGACTTAACTGCACCTTGGGTAAAATGGTATGA
GCTGGCCTCAGGGGCTCAGCCTCTGGTTTTCCTAGTATGTAAGCATGCTC
TACTTTGGGGTTATGAGTTCATGTCGGCAGAGTGGATGAAAGTGTGGAAC
TTCCTTAATAATCATGGCTGTTGTTCTTGGTTCCCAGAAACCCAAAGGAA
GACATTTTCTTTGGTCTGAAGAGCCCATTGGTAATTCTTTCTGGAACCAC
TTTGTTAAATGTTGAGAGGTATTAAAGAAGGCAAACTAGAAATTCAAAGC
TAGGTTTGTAAAAGGCTTGCTAAGACTGAAAGCTAATCATATACTTGAGA
GCATAGACTCTTGAGAGTTTGCTAATGTTTATAAGGCTCGGGAGATACCT
TTTACAAAGAATAACACATTAAAGTCTTCCCTGTTTACCTGTGTGTACAA
AACCGATAACATCTCCGATAAATGACTAACATGAGGTACTTCTCAGTATT
AAAAATAATCTGTGCCTTTTGAATATCTCATTTCCTTTTTTATTAGTAAA
AGTTCCCCAACTTTCTTTACGTTAACTATTTCCAATGGATAATTTACATT
CCTGCTGGCAAACAAATGGCTTTCATAAACATAGGATTTGGGATTTTCCA
AAAATATCTAAAGAGCATCTCTCCTTAAGATACGAACTCTTG

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAAATTCTGACAGGCTGAGT
TTGGCTAACCTGACTTCAGGGAGAGCAGCTTATTATCTCTGGTGGGTTCA
CTCTTGTCCAAGCACTCAATGTCAAGCATGTTTCATTAATAGACATCCAG
TTAAAGCCCACATTTTCAAGATTAAGAAGATTTATTTTGCTTCCTGACCC
TATCAAGTCCCAGATCTTCTCAAGAGTTTCTCATGCCACAAATAAAGGCC
AAGTGGACAAAACACAGTTTGGCAAGAGGACAGGCCCTGGTCAGAAACTC
CCTGACTTCCACTGATAATTCCATCAACACATTAGCTAGTCAGTTTCTCT
CCTGCTGATGTTGCTCCTCATCTTCCTGTCCTTGCTCCTCCTCATTCTGA
TTCCCTTCCTCTTTCTGTTCTTACTCCCTTCCTTGTACTGATGCTATTCC
TCCTGATGCTCCTCCATCTCTGCCTCCTCCTCCTCCTGATGCTCCTCCTC
CTCCTCCTCCTCCTCCTGATGTTCCTCCTCCTCCTCCTGCTCCTCTTCCT
GCTCCTCCTCCTCCTCCTCCTGCTCCTGCTCCTGCTCCTCCTCCTGCTCC
TCCTCCTGCTCCTGCTCCTCCTCCTCCTCCTGCTCCTGCTCCTGCTCCTG
CTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_n06.b1 MSMg01no131_n06.b1 CHROMAT_FILE:
MSMg01no131_n06.b1 PHD_FILE: MSMg01no131_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:10 2005
         (141 letters)



>mm_chr10_35724044_35724584
          Length = 541

 Score =  242 bits (125), Expect = 8e-69
 Identities = 137/141 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taactgcaccttgggtaaaatggtatgagctggcctcaggggctcagcctctggttttcc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| 
Sbjct: 341 taactgcaccttgggtaaaatggtatgagctggcctcaggggcacagtctctggttttcg 282

                                                                       
Query: 61  tagtatgtaagcatgctctactttggggttatgagttcatgtcggcagagtggatgaaag 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taggatgtaagcatgctctactttggggttatgagttcatgtcggcagagtggatgaaag 222

                                
Query: 121 tgtggaacttccttaataatc 141
           |||||||||||||||||||||
Sbjct: 221 tgtggaacttccttaataatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no131_n06.g1 MSMg01no131_n06.g1 CHROMAT_FILE:
MSMg01no131_n06.g1 PHD_FILE: MSMg01no131_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:11 2005
         (628 letters)



>mm_chr10_35627944_35628971
          Length = 1028

 Score = 1191 bits (616), Expect = 0.0
 Identities = 625/628 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaaattctgacaggctgagtttggctaacctgacttcagggagagcagcttattatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaaattctgacaggctgagtttggctaacctgacttcagggagagcagcttattatct 260

                                                                       
Query: 61  ctggtgggttcactcttgtccaagcactcaatgtcaagcatgtttcattaatagacatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtgggttcactcttgtccaagcactcaatgtcaagcatgtttcattaatagacatcc 320

                                                                       
Query: 121 agttaaagcccacattttcaagattaagaagatttattttgcttcctgaccctatcaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttaaagcccacattttcaagattaagaagatttattttgcttcctgaccctatcaagt 380

                                                                       
Query: 181 cccagatcttctcaagagtttctcatgccacaaataaaggccaagtggacaaaacacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagatcttctcaagagtttctcatgccacaaataaaggccaagtggacaaaacacagt 440

                                                                       
Query: 241 ttggcaagaggacaggccctggtcagaaactccctgacttccactgataattccatcaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggcaagaggacaggccctggtcagaaactccctgacttccactgataattccatcaac 500

                                                                       
Query: 301 acattagctagtcagtttctctcctgctgatgttgctcctcatcttcctgtccttgctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acattagctagtcagtttctctcctgctgatgttgctcctcatcttcctgtccttgctcc 560

                                                                       
Query: 361 tcctcattctgattcccttcctctttctgttcttactcccttccttgtactgatgctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctcattctgattcccttcctctttctgttcttactcccttccttgtactgatgctatt 620

                                                                       
Query: 421 cctcctgatgctcctccatctctgcctcctcctcctcctgatgctcctcctcctcctcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcctgatgctcctccatctctgcctcctcctcctcctgatgctcctcctcctcctcct 680

                                                                       
Query: 481 cctcctcctgatgttcctcctcctcctcctgctcctcttcctgctcctcctcctcctcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 cctcctcctgatgttcctcctcctcctcctgctcctcttcctgctcctcctcctcctgct 740

                                                                       
Query: 541 cctgctcctgctcctgctcctcctcctgctcctcctcctgctcctgctcctcctcctcct 600
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 cctgctcctcctcctgctcctcctcctgctcctgctcctgctcctgctcctcctcctcct 800

                                       
Query: 601 cctgctcctgctcctgctcctgctcctc 628
           ||||||||||||||||||||||||||||
Sbjct: 801 cctgctcctgctcctgctcctgctcctc 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 187
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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