Query= MSMg01no131_o18.b1 MSMg01no131_o18.b1 CHROMAT_FILE:
MSMg01no131_o18.b1 PHD_FILE: MSMg01no131_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:17 2005
(577 letters)
>mm_chr10_18881270_18882247
Length = 978
Score = 998 bits (516), Expect = 0.0
Identities = 566/588 (96%), Gaps = 11/588 (1%)
Strand = Plus / Plus
Query: 1 cattgcaggaa-aaccacagtgccttgcacacaataattttgaattccactggggtgatg 59
||||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 191 cattgcaggaacaaccacagtgccttgcacacaataattttgaactctaatggggtgatg 250
Query: 60 gaaacagaatccaatagagagataatgtaagagaagtttagtgacacagccacagcccat 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 251 gaaacagaatccaatagagagataatgtaagagaagtttagtgacacagccacatcccat 310
Query: 120 gagtagctgtctccatacccaccccaaacccctaaatactatatgccaagttgagcaaac 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gagtggctgtctccatacccaccccaaacccctaaatactatatgccaagttgagcaaac 370
Query: 180 tggacttccaggactccgaggtggtttccaaatgatgttctaaagtgatcacaaagcaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tggacttccaggactccgaggtggtttccaaatgatgttctaaagtgatcacaaagcaaa 430
Query: 240 cgcttcctgtcagttgacagctggagctctttttcctcgtggtattttgtggctgaccta 299
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgcttccagtcagttgacagctggagctctttttcctcgtggtattttgtggctgaccta 490
Query: 300 ctacactcattttgttgttgttgttgttgttgttgttgtcgccgctgtt---------ac 350
||||||||||||||||||||||||||||||||||||||| | | |||| ||
Sbjct: 491 ctacactcattttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttac 550
Query: 351 ctacccacatgatcattaaatgacacattctgcaattcccttttaggcggaatgctaaca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctacccacatgatcattaaatgacacattctgcaattcccttttaggcggaatgctaaca 610
Query: 411 atagaaaaactcagattgcatgtggtgagtgttacagggctctgaatttttttt-ctggg 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 611 atagaaaaactcagattgcatgtggtgagtgttacagggctctgaatttttttttctggg 670
Query: 470 taatgggactcttggttcagacaaagtatgacagtacagtgagttctgcattaataaaca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 taatgggactcttggttcagacaaagtatgacagtacagtgagttctgcattaataaaca 730
Query: 530 ccagataagctccagcaatctgccctggataggtggaagttccaggct 577
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ccagataagctccagcaatctgccctggataggtggaagttccaggct 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_o18.g1 MSMg01no131_o18.g1 CHROMAT_FILE:
MSMg01no131_o18.g1 PHD_FILE: MSMg01no131_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:18 2005
(532 letters)
>mm_chr10_19057623_19058553
Length = 931
Score = 959 bits (496), Expect = 0.0
Identities = 523/532 (98%), Gaps = 1/532 (0%)
Strand = Plus / Minus
Query: 1 caaacagactgtttgaggggttgtgggatatctgattaccaattttgagcgggttttccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 caaacagactgtttgaggggttgtgggatatctgattaccaattttgagcgggttttccc 536
Query: 61 tgcacactgcttttgactaattgcatttttcaaaaaagaagacaaaataaaacaaaaccc 120
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 535 tgcacgctgcttttgactaattgcatttttcaaaaaagaggacaaaataaaacaaaaccc 476
Query: 121 ccaaagatttccaaattaacaaatttgtgaggaaagtgaaatacatgaagcaatttcata 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 475 ccaaagatttccaaattaacaaatttgtgagaaaagtgaaatacatgaagcaatttcata 416
Query: 181 attagattaagggaaattctgttatctgaatggatttttttccccacctagatgagcctg 240
||||||||||||| ||||| |||||||||||||| ||||||||||||| |||||||||||
Sbjct: 415 attagattaaggggaattcagttatctgaatgga-ttttttccccacccagatgagcctg 357
Query: 241 aaatattttcagggacccaccacaatcccactttatttggacagtcactacaactgatgg 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 356 aaatattttcagggacccaccacaatcccactttattcggacagtcactacaattgatgg 297
Query: 301 tgcttttataagaggcaagtcaagtgctttgatttttagaaaatcctcccccaaacaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgcttttataagaggcaagtcaagtgctttgatttttagaaaatcctcccccaaacaggc 237
Query: 361 tgattttaaaaatcttcattatcttagccaacataacttaatatgcatcaagcactattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgattttaaaaatcttcattatcttagccaacataacttaatatgcatcaagcactattt 177
Query: 421 tacggactaacaaatattaattcatcaaagcatcatagtagccatatggggtagatgcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tacggactaacaaatattaattcatcaaagcatcatagtagccatatggggtagatgcta 117
Query: 481 taaaatcttatacctcctctcttctgggggtaggacagattagcttgtccca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 taaaatcttatacctcctctcttctgggggtaggacagattagcttgtccca 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space: 480762
Effective search space used: 480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
