Query= MSMg01no132_j07.b1 MSMg01no132_j07.b1 CHROMAT_FILE:
MSMg01no132_j07.b1 PHD_FILE: MSMg01no132_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:08 2005
(529 letters)
>mm_chr10_88963198_88964113
Length = 916
Score = 748 bits (387), Expect = 0.0
Identities = 471/509 (92%), Gaps = 23/509 (4%)
Strand = Plus / Minus
Query: 27 ctagtagtaatgacaataacatcaaccatttgagcggcttgaagaacattttagaggcac 86
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 914 ctagtagtaatgacaataacatcaaccatttgtgcgccttgaagaacattttagaggcat 855
Query: 87 ggggca-caggcacagaagcctgacatacaactccaaattcccaaacttctagaaaccat 145
|||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 854 ggggcacca-gcacagaagcctgacgtacaactccaaattcccaaacttctagaaaccat 796
Query: 146 tgtttttttaagttcagtagggttttaaatgttcagtt------ttttgttttgttttgt 199
|||||||||||||||||||| |||||||||||| |||| ||||||||||||||||
Sbjct: 795 tgtttttttaagttcagtagagttttaaatgtttagtttttttgttttgttttgttttgt 736
Query: 200 tttgtttttgtttgttttttcggcgaccattcctgggctgaaagatgtgaaacactggct 259
|||||||||||||||||||| |||||||||| |||||||||| |||||||||||||| ||
Sbjct: 735 tttgtttttgtttgtttttttggcgaccatttctgggctgaaggatgtgaaacactgcct 676
Query: 260 aaacaaattatttgttctcctttgtgtgaatattgacagaacagcactgaagaaagcttt 319
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 675 aaacaaattatttgttctcctttgtgtgaatattgacagaacagtactgaagaaagcatt 616
Query: 320 gct-gagttctatccagcggtgtgaacaccacctaaggaacaaagaaagaatactgaatg 378
||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gctag-gttctatccagcagtgtgaacaccacctaaggaacaaagaaagaatactgaatg 557
Query: 379 ttctgaaatctaaaagaaatgtgtgtgtgtgtgtgtttttttttttctcttttctgtggt 438
|||||||||| ||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 556 ttctgaaatccaaaagaa--------gtgtgtgtgtttctttttttctcttttctgtggt 505
Query: 439 tctggggatcaagttcaggcccaatcaagaggttctaaattttatttatttgtttagttt 498
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 504 tctggggatcaagttcaggcccaatcaagaggttctaaattttatttattt----a-ttt 450
Query: 499 attttatcaattgtatagttgccagtgtg 527
|||||||||||||||||||||||||||||
Sbjct: 449 attttatcaattgtatagttgccagtgtg 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 916
Length adjustment: 10
Effective length of query: 519
Effective length of database: 906
Effective search space: 470214
Effective search space used: 470214
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_j07.g1 MSMg01no132_j07.g1 CHROMAT_FILE:
MSMg01no132_j07.g1 PHD_FILE: MSMg01no132_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:08 2005
(249 letters)
>mm_chr10_88851495_88852144
Length = 650
Score = 476 bits (246), Expect = e-139
Identities = 249/250 (99%), Gaps = 1/250 (0%)
Strand = Plus / Plus
Query: 1 actagagctaaaaaa-catgtaactacaaaaatggcaatcagatgtaacattcacagcca 59
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagagctaaaaaaacatgtaactacaaaaatggcaatcagatgtaacattcacagcca 260
Query: 60 gcaaaaaatggacactggaacagcatgcaaagcaaagaaccactctgtctggagtctaca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaaaaatggacactggaacagcatgcaaagcaaagaaccactctgtctggagtctaca 320
Query: 120 cccagacgaagaatgcctggcttgcttgaggtttgtaggtgtggaggtatcccctgttca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagacgaagaatgcctggcttgcttgaggtttgtaggtgtggaggtatcccctgttca 380
Query: 180 caaagttagggacaatttaaaagaagaaaaagattccttttaagcaccacaaaatccaac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagttagggacaatttaaaagaagaaaaagattccttttaagcaccacaaaatccaac 440
Query: 240 caaacaaaac 249
||||||||||
Sbjct: 441 caaacaaaac 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space: 153840
Effective search space used: 153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
