BAC Information

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BAC

Clone NameMSMg01-132J09
Chromosome10 (Build37)
Map Location 3,558,500 - 3,558,968
singlet/doubletsinglet
Overlap genenone
Upstream geneCnksr3, Oprm1, A130090K04Rik
Downstream geneLOC237252, LOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132J09.T7 (MSMg01no132_j09.b1)MSMg01-132J09.TJ (MSMg01no132_j09.g1)
ACCAG339790AG339791
length685680
length of high quality
(start - end)
470 (80 - 549)334 (76 - 409)
definitionCHROMAT_FILE: MSMg01no132_j09.b1 PHD_FILE: MSMg01no132_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:08 2005CHROMAT_FILE: MSMg01no132_j09.g1 PHD_FILE: MSMg01no132_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCC
GCGGAATTCAGTTTATCCTTCTACAACCAAATGGGAGCGGGGACATTTAT
TTCCAGTATTTATAGTTAAAACTATGGGTATGCGCATGCGCATGCATATG
CATACACAGTGTTGAGACGAAACCACACTACTGCTGAATTTACGATTGTA
TTCCTTCAGAAGCACTTGTGAACTTAGACATGAGATCTAACATTTTTTAA
ATGCATTCTTGCTCCTCAAGGATCTTGCTTAAGGCCATTTCACACTCAAA
AGAGCTGTGGAGTTTCTTTTGGATTCTCTATAGTGGGAAGAAAAAACATT
TCTGCTTGATTCAGTAACCTGCTCCCCAGAAGCTCGGGAGAGTGGAGGCA
GTGCGAAAGCTTAGGATAAATCTTCCTAAGCAGGTCCAGGAGAGTAGACC
TGGCATGGGCAGTGGGTTCCTTATTTACAGGTTATCACCCCTCCTCCCTC
ACATCTCTAATGTGTTCTTATGCTTCTTCTTCACTAGGAAAAAAATCAGA
TGCAAATAGACCTTCTAACCTAATATAAATTGAAGGAGTGGGGGCACATG
AAACAGGCTTCTTTCACAAAAATTTCGTCTTTTATAAAAAGACACTTGTT
TCTTTGAATAGGTTTGCGCGTCTCGATTTCTTGAC
NCTCGATGAAGTGGGTAGGCTGGCGGCCGCCTGTTCAAAAAAGGGGGGTG
ACCTATAGAATTTCAAAAAGAAGTCTTTGTTTAGCTCTGTGCCCCATTTT
TAAATGAAGTTATTTGATTTTCACGAGTTCAACTTCTTGAGCTCTTTGTA
TATATTGGATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATTCTTT
CCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACTGTGTCTTTTGCCTTA
CAGAAACTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTTGC
AGTACAAGCCATTGCTGTTTTATTCAGGAATTTTCCCCCTGTGCCCATAT
CTTCGAGTTTTTTCCCCCCTCCCCCCTCTATAATTTTCAGTGTCTCTGGT
TTTATGTGTAGTTCTTTGATCCAATTAAAATTGACCTTTGTACAAGGAGA
TCAATTCGTATTCTTCTATATGATATCTGCCAGTTGTGCCAGCACCATTT
GTTGAAAATGTTGTCTTTTTTCCTCTGGATGGCTTTATCTCCCTTGTCAA
AGATTACGCGGCCATATGTGTGTTGGTTCATTCCTGGGTCTTTAATTCTC
ATTCCCTCTGTTTACCTGCCTATTGCTGTTACACCACTCCGCATACTTTT
GTAAATCATCATTACTCTTAGTTACTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_j09.b1 MSMg01no132_j09.b1 CHROMAT_FILE:
MSMg01no132_j09.b1 PHD_FILE: MSMg01no132_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:08 2005
         (470 letters)



>mm_chr10_3558300_3559168
          Length = 869

 Score =  893 bits (462), Expect = 0.0
 Identities = 468/470 (99%), Gaps = 1/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgggagcggggacatttatttccagtatttatagttaaaactatgggtatgcgcatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 669 aatgggagcggggacatttatttccagtatttatagttaaaactatgggtatgcgcatg- 611

                                                                       
Query: 61  gcatgcatatgcatacacagtgttgagacgaaaccacactactgctgaatttacgattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gcatgcatatgcatacacagtgttgagacgaaaccacactactgctgaatttacgattgt 551

                                                                       
Query: 121 attccttcagaagcacttgtgaacttagacatgagatctaacattttttaaatgcattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 attccttcagaagcacttgtgaacttagacatgagatctaacattttttaaatgcattct 491

                                                                       
Query: 181 tgctcctcaaggatcttgcttaaggccatttcacactcaaaagagctgtggagtttcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgctcctcaaggatcttgcttaaggccatttcacactcaaaagagctgtggagtttcttt 431

                                                                       
Query: 241 tggattctctatagtgggaagaaaaaacatttctgcttgattcagtaacctgctccccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tggattctctatagtgggaagaaaaaacatttctgcttgattcagtaacctgctccccag 371

                                                                       
Query: 301 aagctcgggagagtggaggcagtgcgaaagcttaggataaatcttcctaagcaggtccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aagctcgggagagtggaggcagtgcgaaagcttaggataaatcttcctaagcaggtccag 311

                                                                       
Query: 361 gagagtagacctggcatgggcagtgggttccttatttacaggttatcacccctcctccct 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gagagtagacctggcatgggtagtgggttccttatttacaggttatcacccctcctccct 251

                                                             
Query: 421 cacatctctaatgtgttcttatgcttcttcttcactaggaaaaaaatcag 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cacatctctaatgtgttcttatgcttcttcttcactaggaaaaaaatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 869
Length adjustment: 10
Effective length of query: 460
Effective length of database: 859
Effective search space:   395140
Effective search space used:   395140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)