Query= MSMg01no133_c11.b1 MSMg01no133_c11.b1 CHROMAT_FILE:
MSMg01no133_c11.b1 PHD_FILE: MSMg01no133_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:53 2005
(531 letters)
>mm_chr10_26394516_26395444
Length = 929
Score = 924 bits (478), Expect = 0.0
Identities = 516/530 (97%), Gaps = 8/530 (1%)
Strand = Plus / Minus
Query: 5 ggaattcattatgtctc-ctgaacgctgtgctgatgactttcagacacactgggtcctgt 63
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggaattcattatgtc-cactaaacgctgtgctgatgactttcagacacactgggtcctgt 671
Query: 64 gagtcttcaaggaagctatggtggtgttcccatctgaaggtcagagagggcagtggcttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gagtcttcaaggaagctatggtggtgttcccatctgaaggtcagagagggcagtggcttc 611
Query: 124 accatcaacggagcctaactcagctcatggcacgggtgcatgttggagagcattctgatc 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 accatcaatggagcctaactcagctcatggcacgggtgcatgttggagagcattctgatc 551
Query: 184 ataggaaaccataatagtcgttgcttcccctaaagtccacaatccccttatcttcacaga 243
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ataggaaaccataatagtcattgcttcccctaaagtccacaatccccttatcttcacaga 491
Query: 244 gtagatcattttaaaaagcatttcacatcatactgtgctgcctatccattctatgactta 303
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 490 gtagatcattttaaagagcatttcacatcatgctgtgctgcctatccattctatgactta 431
Query: 304 tgttcttcctacagccaagctataccttctattgacaagtgggaaagccatttgctttca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgttcttcctacagccaagctataccttctattgacaagtgggaaagccatttgctttca 371
Query: 364 aatactgcctttctggacatcctgtgaaaaccaccccgatttttatgttgattttgaata 423
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 370 aatactgcctttctggacatcctgtg--aaccaccccgatttttatgttgattttgaata 313
Query: 424 agttttgtgagaccaatctg--ctgttttcctctttcatagttgtgcagtttttgaattg 481
|||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||
Sbjct: 312 agttttgtgagaccaatctgttct-tttt-ctctttcatagttgtgcagtttttgaactg 255
Query: 482 aggtgtttgtgaggcttatcattactctttagactatctttactcttttt 531
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aggtgtttgtgaggcttatcattactctttagactatctttactcttttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 929
Length adjustment: 10
Effective length of query: 521
Effective length of database: 919
Effective search space: 478799
Effective search space used: 478799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_c11.g1 MSMg01no133_c11.g1 CHROMAT_FILE:
MSMg01no133_c11.g1 PHD_FILE: MSMg01no133_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:53 2005
(555 letters)
>mm_chr10_26202127_26203081
Length = 955
Score = 949 bits (491), Expect = 0.0
Identities = 539/555 (97%), Gaps = 1/555 (0%)
Strand = Plus / Plus
Query: 1 ctagacataggtgctttgagactgtcacatgctacccctaaccagcaccagccctgagat 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ctagacataggtgctttgagactgtcacatgctacccccaaccagcaccagccctgagat 260
Query: 61 gctgaagtctttcccagtttctatcatcttgtttcttgggtaagcaggttaaatcttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgaagtctttcccagtttctatcatcttgtttcttgggtaagcaggttaaatcttttt 320
Query: 121 gttttgttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactttgt 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gttttgttttcgagacagggtttctctgtgtagccctggctgtcttggaactcactttgt 380
Query: 181 agaccaggctggcctcaaactcagaaatctgcctgcctctgcctcccgagtgctgggatt 240
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 381 agaccaggctggcctcaaactcagaaatccacctgcctctacctcccgagtgctgggatt 440
Query: 241 aaaggcatgcgccaccaccgcctggctagcaggttaaatcttaagcagcttaagatataa 300
|||||| |||| |||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 441 aaaggcgtgcgtcaccaccgcctgtctagcaggttaaatcttaagcagcttaagagataa 500
Query: 301 gcatgctaagtaaaaactactaatgcaaattttcaaattatttttttaaagattttattg 360
|||| |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 501 gcattctaagtgaaaactactaacgcaaattttcaaattatttttt-aaagattttattg 559
Query: 361 attaatgttgactttacctaaggtgggtagattaaattttctaagaatctacagcctgta 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 attaatgttgactttacctaaggtgggcagattaaattttctaagaatctacagcctgta 619
Query: 421 aacattctagattccttgtagtagtaagagaaaatggttgcatatttgaataaaatgtta 480
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 620 aacattctagattccttgtagtagtaagagaaaatggctgcatatttgaataaaatttta 679
Query: 481 ttgctaagacaattctgcaagaattatctaaatcatatgaaatgtttcagtaaacacttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgctaagacaattctgcaagaattatctaaatcatatgaaatgtttcagtaaacacttt 739
Query: 541 ttgtgggaactgctc 555
|||||||||||||||
Sbjct: 740 ttgtgggaactgctc 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
