BAC Information

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BAC

Clone NameMSMg01-133F24
Chromosome10 (Build37)
Map Location 6,643,107 - 6,643,642
singlet/doubletsinglet
Overlap genenone
Upstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
Downstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133F24.T7 (MSMg01no133_f24.b1)MSMg01-133F24.TJ (MSMg01no133_f24.g1)
ACCAG340373AG340374
length721695
length of high quality
(start - end)
273 (378 - 650)533 (77 - 609)
definitionCHROMAT_FILE: MSMg01no133_f24.b1 PHD_FILE: MSMg01no133_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:10 2005CHROMAT_FILE: MSMg01no133_f24.g1 PHD_FILE: MSMg01no133_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TGAGCTTCCCCAAAGAGACGCTCCGTCAGGTTTATCAGCAGTGAGCATGT
CCCAATGGAATTTATTGCCAACATCATCAAAGCAGCAGGTTGGTAACTGG
ATGCTGAACCTTGCAGAATGTCAGAGGCTGTGACAGAGACAGTGTTGGGA
CAGCACTAAAGTCCAAACATATAGACAAAGCCAGAGTGGTATGTTTATCT
ATGAAGGCGTTGTAGTTTTGGTTTTACTGCTGTGAAGAGATATCACGACC
AAGGCAATTCTTATAAGGAGATTTAGTTAGGACTGATTTACAGGTTCAGA
GGTTTAGTTTTCTATCACCCCCCCCCCAGCATGGCAGCTTCAAGACAGGC
ATGGCACTGGAGGAGCTGAGAGAAAAACATCTTGTTCCTAAAGAAAACAG
GAGACTGTCCTCAGGCAGCTAGGAGGATGGTCTCAAAGTCCATGCCCACG
GTGACACACCTCCTCCAACAAGGTCACACCTCTTAATAGTGCCACTTCCT
GGGCCAAGCATATTCAAACCACCACAAAGGCTTTCCCATTGTTAATGACT
GCCAGAAACACGGATCCCTCCTTCCTACATTTTGATTCCCCATTTCTTGG
AAAACAGATGTGATGGCCATTAAAAACTTTTGAAGTCATACATTTTATAA
ATTTTGTTTAAAGCTAAAATT
CCTACATGCTAGGAGAGGCTGGNGGAGCCTGGCATCCCCATCGGGTGAAC
TATAGAAGGATTGCGAAAATTACCCAAGACATGCCTCACTACAGAAAGCA
CTTAGCTGGATCCTTTGGCTCTCCAAATGTTGGGAACCCCACCGGAGAAT
CATGGACAACCCACACAGAGATATTCTCTGGAAAACGAGGTCACAACTCA
GAATTCAAAAATACAGTAACAGCTTAGGAGATGCATCAGGAACTGCCCCC
CCCCACCCCCCATTTCCTGGGCTCTCCTAGTCTGGGCCTGCTTCTCACTC
CTCTGACCCTTTCCCGTTCTTTTCTTTAACTCAGGAAAGAGAAGCTGAGA
CAGGAACAAAAGTAGCAAGAAACATACCAGGGATCTCTTGCCCCAACTTT
CACTGGTGGTTGAGTGGGACTGGTACATGAAAACCAAATAAACCCCTCCT
CCCCGAGTGGCTTTTGGCCAGAATGTTTTATTACAGCAATAGAAAGCAAA
CCAATAGAAGCCCCAATAAATTCAAATTTACCCCAGGAATCTAAGGCAGG
AAGAAGGAATAGACCAGTGCCTGATGCCAGCCAGAGGAGGAATTTTTATC
TCCTGGACAAGATGTCACACAGTTCTGACAGCCTGCCAGACTACTTTGCA
GGAGAAACTGGAGCTTAGACAAGACACTTCACATAAGCACAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_f24.g1 MSMg01no133_f24.g1 CHROMAT_FILE:
MSMg01no133_f24.g1 PHD_FILE: MSMg01no133_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:10 2005
         (533 letters)



>mm_chr10_6642916_6643847
          Length = 932

 Score =  899 bits (465), Expect = 0.0
 Identities = 516/539 (95%), Gaps = 11/539 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacatgcctcactacagaaagcacttagctggatcctttggctctccaaatgttgggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 192 agacatgcctcactacagaaagcacttagctggatcctttggctctagaaatgttgggaa 251

                                                                       
Query: 61  ccccaccggagaatcatggacaacccacacagagatattctctggaaaacgaggtcacaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccccaccagagaatcatggacaacccacacagagatattctctggaaaacgaggtcacaa 311

                                                                       
Query: 121 ctcagaattcaaaaatacagtaacagcttaggagatgcatcaggaactgcc--------c 172
           |||||||||||||||||||||||||||||||||||||||||||||||||||        |
Sbjct: 312 ctcagaattcaaaaatacagtaacagcttaggagatgcatcaggaactgccccaccccac 371

                                                                       
Query: 173 ccccccaccccccatttcctgggctctcctagtctgggcctgcttctcactcctctgacc 232
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 372 cccccccccccccatttcctgggctctcctagtctgggcctgtttctcactcccctgacc 431

                                                                       
Query: 233 ctttcccgttcttttctttaactcaggaaagagaagctgagacaggaacaaaagtagcaa 292
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctttcccgttcttttccataactcaggaaagagaagctgagacaggaacaaaagtagcaa 491

                                                                       
Query: 293 gaaacataccagggatctcttgccccaactttcactggtggttgagtgggactggtacat 352
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 492 gaaacataccagggagctcttgccccaactttcactggtggttgagtgggactggtacag 551

                                                                       
Query: 353 gaaaaccaaataaacccctcctccccgagtggcttttggccagaatgttttattacagca 412
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 552 gaaatccaaataaacccctcctccctgagtggcttttggccagaatgttttattacagca 611

                                                                       
Query: 413 atagaaagcaaaccaatagaagccccaataaattcaaatttaccccaggaatctaaggca 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atagaaagcaaaccaatagaagccccaataaattcaaatttaccccaggaatctaaggca 671

                                                                      
Query: 473 ggaagaaggaatagaccagtgcctgatgccagccagaggaggaatttttatctcctgga 531
           |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ggaag---gaatagaccagtgcctgatgccagccagaggaggaatttttatctcctgga 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 932
Length adjustment: 10
Effective length of query: 523
Effective length of database: 922
Effective search space:   482206
Effective search space used:   482206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)