BAC Information

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BAC

Clone NameMSMg01-133J14
Chromosome10 (Build37)
Map Location 41,698,705 - 41,698,895
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2
Downstream gene1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133J14.T7 (MSMg01no133_j14.b1)MSMg01-133J14.TJ (MSMg01no133_j14.g1)
ACCAG340534AG340535
length693721
length of high quality
(start - end)
192 (125 - 316)57 (177 - 233)
definitionCHROMAT_FILE: MSMg01no133_j14.b1 PHD_FILE: MSMg01no133_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:27 2005CHROMAT_FILE: MSMg01no133_j14.g1 PHD_FILE: MSMg01no133_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGCG
GAACTCTAGAATCTCCAGCATGTCTACAACACACAGTGTGGCCCAGTCTT
GGGGAACAACTTCATATTCTCAAAAGGACTTTCATCTAGGTTCACTGCTT
GCTAAATATAAAAATAATGATTCAACAGGAAAATTGGGTAAGTCAGGCAA
GAAATACTGCCTGTTTTTGAAGATTCTGCTGTCTCCGTGGTTATAGCTGT
TAACCACAGCTTTCAGCTTTGGACCCAACAGCTTGATACATTGTTAGCAT
TGGCTGGTGTTTTTATTTTGTAAACGTAAACCCCTTAGCAACAATGTTGT
CTATTGAATCGTTTCCCCCCACCCCCCCCTGAGTTCTAGATACATTGCAG
GTGACCACTAATTGTCTACAAACAAATAAAGAGCTAGTTTGAAGATAACA
TCTTTTACACGGTGCTAGATTGATATCATTTATCATCATTTTTTATTTTT
GTTGAGACAAGGTCTTACTGTAGCTCAGAATGGCCTGCAATTCATAAACC
TGTCTCTGCTTCCAAAATGTTCAGATTATAGATGTGCACTCCTATACCCC
GACATAAACTTTTTGCGTGAAATGAAAAAAAATACTATGAAGAACATTAC
ATACACTGTCCTACCTTGACTAATTTCGTTCATTGTTAACAAT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCGAAATACCATAGGCAGTTCACCCTCGCCCTGACTC
TATAAATGTAATCAAACTCTTCCATCTACATCTGGTTGACCCTACCTTTC
ATGTTTATCTCAAGCTCTTCCAGTCAGCCCCTCCCTAATTAATGCACAAG
TAGGGTGACCTGTTGAGCTTATTCCTGACACTGTGGGGGCAGCTGGTATA
AGTGCCTCACATGCTGTTCTGTCGGCTGAGTCTTCTATGGTATACTTCCA
GCTTGTTGCTGTGCGCTTATCCTTTATGCCACCAAGATAAATGACCTACT
AATACAGTAAATAAATCCATCTCATGATTCAATTATTTATAATTGTCCTC
ATATTCCTGAACCTAATTACTATGTCGATTACGCTCAATGCCGCATAACT
TCTTGCTCTCTGTCATCTGACTTCGCTGCATATCTTGTATGGCCCCGCCC
AGTTGTTTTCCACTGTGTTTTCTCCACATTCTGCACATTGTCCCCTGACA
TTTCCGAAACCTACTCTCCCATTTGTTATCAACTCACTGCTCTTCTTCCT
ATCCCTTGCCCCATCTCTCTGCGTCTGCTCGCATCGCATCTCTTTTTTTT
CTCACTACCATTAAGAAACAACTACTCCATTCCTTCCGCTGACACCCTCA
CCCGTCTCCTTCTCCGATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_j14.b1 MSMg01no133_j14.b1 CHROMAT_FILE:
MSMg01no133_j14.b1 PHD_FILE: MSMg01no133_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:27 2005
         (192 letters)



>mm_chr10_41698505_41699096
          Length = 592

 Score =  369 bits (191), Expect = e-107
 Identities = 191/191 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggactttcatctaggttcactgcttgctaaatataaaaataatgattcaacaggaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggactttcatctaggttcactgcttgctaaatataaaaataatgattcaacaggaaaat 260

                                                                       
Query: 61  tgggtaagtcaggcaagaaatactgcctgtttttgaagattctgctgtctccgtggttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtaagtcaggcaagaaatactgcctgtttttgaagattctgctgtctccgtggttat 320

                                                                       
Query: 121 agctgttaaccacagctttcagctttggacccaacagcttgatacattgttagcattggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgttaaccacagctttcagctttggacccaacagcttgatacattgttagcattggc 380

                      
Query: 181 tggtgttttta 191
           |||||||||||
Sbjct: 381 tggtgttttta 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)