BAC Information

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BAC

Clone NameMSMg01-133L10
Chromosome10 (Build37)
Map Location 80,225,493 - 80,225,730
singlet/doubletsinglet
Overlap geneDot1l
Upstream geneRnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1
Downstream genePlekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133L10.T7 (MSMg01no133_l10.b1)MSMg01-133L10.TJ (MSMg01no133_l10.g1)
ACCAG340616AG340617
length705715
length of high quality
(start - end)		232 (121 - 352)46 (75 - 120)
definitionCHROMAT_FILE: MSMg01no133_l10.b1 PHD_FILE: MSMg01no133_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:35 2005CHROMAT_FILE: MSMg01no133_l10.g1 PHD_FILE: MSMg01no133_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTAGTGTCGCACCAGATGTGGGCTGTCCCTGTACAAAGAGACCAGCAT
TTCTCATGAATTTTTGCCCCTGGGGCTGTGCCCAGCATAGTCCCTTCATT
CCCAGGTACCTGCATGCCTGTCCCTTTCCTAGGAACACAGCTGGAAGAAT
CTGCTCCTCTTAGTTTGTAAGCTCAGGACTGAGTGGGCATAGTAGGCCCA
ACAAAACTCAAGAGTGTGTCCTGGTCCTCAGTAAGTGGGGAAGCCCTAAG
AACCCTACAAGATAATCAATCAATCCCAACATTTGGGAGGTAGAGACAGG
TGTTTTGTTACCTCCCCGCCCGCCTGCACCATGTCCATGCAGTGCCTATG
GAGGCCAGAAGAAAGAATCATATCCACTGGAGCTGGAGTGATAGGCTGTT
GTGAGCCACCATGTGGTTGCTGGGAATTGAACCTGGATTATCTGCTAGAG
CTTCTAGTGCTCTAACCACCTAGCTGCCTCTCCAGCTGCACAGCATTTCT
AAGATCTTTCTGAGCTGTGACAACCACCTGCGTTGAGCGCCCAGTATGCT
ACTAGAGAGTAGTCCAGGCATGCGTATCACCATGCCATATAGGTCCTCTC
TTCAGTAGTGCTTTGAGTATACTCTCACTCTGTTCTTCTCACGTCTCAAA
GCAAG

ACGATGATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGACCTCTGCCTTCACACGTGTACAT
ACATGAACATAGTACACACAAGCACAGAAAAACATAAAGGCCGTGGTCGA
GGCTCCACAAGTGCTGGCCTCCCAGGGGATCAGGAGCCCCAGAAACCAGG
GACAGAATGACTGTGGTGTTGAAATGGGGCCATATGGCCACCAGCCTGCA
TCATCTGCTTATGGCCTGTACCGTGCACACGCTTGTTCATACCATGGTTC
CCTGGCTTGTCCGTGATACTCCTCTGATTTTGCGCTTTGCAGACTTGCTG
CCCTACGGAGAGTAGGTCCATGATCTTTCACCGTTTCTTTAACTTTTCCG
ATTGTCCCTCATGCTGTATTGTTTACAAATTGTATCCCTCACCACAATTC
TTGTTCTCTTCGATCGTCGTCTCTTCCCCCCCTGATTATCCCCCCCCGCC
CTGTTTTTATCACGTTGTTACCCCCTTTCCGCCCTTTCCCCCCCCCCTTC
CTGCCTCGTGCTGTCCGTTATTTTCTTGTCCTCGTCTCTGCTGCTCCTTC
CCCATCCTCCTCTCTTTTCCTCCTCTCACATCCTCCTCTTTTTTTTCTCC
CCCCACTTGTCTACATCGTCTTCGCTTCCGTCTCTTCCCCCGTCGCCCTT
CCCCTCTCTCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_l10.b1 MSMg01no133_l10.b1 CHROMAT_FILE:
MSMg01no133_l10.b1 PHD_FILE: MSMg01no133_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:35 2005
         (232 letters)



>mm_chr10_80225293_80225924
          Length = 632

 Score =  418 bits (216), Expect = e-121
 Identities = 229/238 (96%), Gaps = 8/238 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggctgtgcccagcatagtcccttcattcccaggtacctgcatgcctgtccctttcct 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tggggctgtgcccagcatagtcccttcattcccaggtgcctgcatgcctgtccctttcct 260

                                                                       
Query: 61  aggaacacagctggaagaatctgctcctcttagtttgtaagctcaggactgagtgggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaacacagctggaagaatctgctcctcttagtttgtaagctcaggactgagtgggcat 320

                                                                       
Query: 121 agtaggcccaacaaaactcaagagtgtgtcctggtcctcagtaagtggggaagccctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaggcccaacaaaactcaagagtgtgtcctggtcctcagtaagtggggaagccctaag 380

                                                                     
Query: 181 aaccctacaagataatcaatcaatc--------ccaacatttgggaggtagagacagg 230
           |||||||||||||||||||||||||        |||||||||||||||||||||||||
Sbjct: 381 aaccctacaagataatcaatcaatcaatcaatcccaacatttgggaggtagagacagg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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