BAC Information

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BAC

Clone NameMSMg01-134B19
Chromosome10 (Build37)
Map Location 127,555,860 - 127,740,351
singlet/doubletdoublet
Overlap geneBaz2a, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a
Upstream geneOs9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, LOC100043085
Downstream geneUsp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134B19.T7 (MSMg01no134_b19.b1)MSMg01-134B19.TJ (MSMg01no134_b19.g1)
ACCAG340907AG340908
length1,2181,197
length of high quality
(start - end)		264 (192 - 455)694 (128 - 821)
definitionCHROMAT_FILE: MSMg01no134_b19.b1 PHD_FILE: MSMg01no134_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:11 2005CHROMAT_FILE: MSMg01no134_b19.g1 PHD_FILE: MSMg01no134_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(127,740,090 - 127,740,351)(127,555,860 - 127,556,553)
sequence
CGAATTTNNNNGGGCACTGGGCGCTAAGACTCACTAAGGGAGAGGATCCG
CGGAATTCAACGAGTAGGGGGTACAGAAAGCGCCGTCAGCTCCGCGGGAA
ATTCCAGTTTCCCCATTACTCCCCCGCCTCTAGCTCAACCTAACCCAAGC
AAGACGGACGGCGGATTGGCAGCCATCGCTTCCAATCTCCAGGGGCCACG
GGCTCATCCTAGCCAATCAGAAAGAGCCAGGTACAGGCAGCGCCTGAGAA
GGAGAGTGACGTAGCCTCCGCCAAAACAAGGTTACGGAATGCCACCGGGG
ACAAACTGAATCAGGCGCGGATCTATTTGGTGTTACGAAAAGTAATCCCT
TCGCTCTCAGGCTTTGTTAAGCAAAATTAACTTTAGACTTTGAAGCCAAG
CTTTTACGCTCCCTGAATAAGAACTAGACTAAAGGGGCGCCAGAGGCTAA
GCATTGTTACTCGCCCGCCGGGTATTCCCAGCGTGGCCTTCAACATTCCC
GGCGTATAGACCTTCATCTTGCTGTGCCTGTGAGCCATTCCAATACCTCT
GACCCTGTACCCCCGAAACTCACTGGCATTTCCTATGACTTCTAGATGTG
GGGAAGAAAAAGGAAGCGGGAGCCTGACTTCTAGTGTGGCCCAAGTGGCC
ACCTTTTCTCTATTTCTAGAGGCATCCATCTGAAATTCCCATCAATGTTT
GTGTCGTCCCCAGAGGTCCCCTAATTTTCCCAAGAAACAAGTCTCCTAGA
CTGTCAAAATTCCCCTAGACCGTGGAGCTGGACATTGACCCCAAGAGAGA
GATTACCAGTAAACTGAGTCAACTGAGCTGTAGCTATTCTGAGGGGTTCT
TGATTAATCTCCAACTAAGAGATCCTACTGGCTTCCCCCCTCCTGGGGGA
ATGTGTCACCGGGTCTAAAAAAATTTTGGGGGTACTGGGCGGTGGATTAA
AAAGGCTTTGGAAATTGGGTCCACCTCTGTAAAATGATTTTATTATTTGT
CCAAATTAAACTCTTTCCTTCTCTGGTTTTTTAAAGGGCCCCGGTGCCTC
TAATGGTTCCCATAACCTTTAAAATATCTCGTTTTATTATATGTTCTAAT
CCGGTATCCCCTTATTTAATTTTTTGGTCTCGATTTTCTTCTTCCCTTAT
TTATTTTTTCACCCCCTCTGTTCTATATTCTTTCTGTTGATTAAAACTCT
CTTTTTTTAGATTCCTGG

NCCAGCCCTNTNNNNAAACATGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATAAAAGGCTAGATTTAGAAT
GGNCTTGGNCAAGAGCCCCTTAAAAGCCTCTAGAGTGAGAGAATGGAGCC
ATTGCCAGGTCCTCATCGTCCCGTCTCACCTCTCCTCCCCCCCACCCTTT
TCTGTTTTTGAATCCCAGCCCAAGCAGAGGTGCTTTCCAAGTCATTTGAG
GAGAAATGACTTCCCTTGTGGTTTACAGGCCAGAAACAAGAGGAAGCAAG
ACACCAAGAGCTTGAAGCAGAAGGACACTAAGAAGAAATTGAAGGTATGC
ACACGAATACATGTCCCAAGTGTAATTTTATTTTCCCAGGGTACATTATG
CATGCTATACAAGCACTCAACCACAGAGCTGAGTTCTGCTCTCAAGTCTG
TTTGTAAAGCACCACAGAGGTTCTCCAAGTGCACTGTGTCAGTGCGACAG
ATAGATCTTGGACTCGAGTGTGAGGTCCTAGGACCAGGCGCGGCTGGACG
GGTCCTCACGCGCTGACGTGTGTCTTCCTCTCTGGGTGGGCAGGCTGAGA
AAGAGAAGATGAAGACAAAGCAGGAAAAGCTGAAGGAAAAGGTAAAGCGA
GAAAAGAAAGAAAAGGTAAAAGCGAAGGGGAAGGAAGGGCCCAGAGCCAG
GCCATCCTGTAGAGCAGACAAGACCCTTGCCACACAGAAGCGGCTAGAGG
AGCAGCAGAGGCAGCAGGCTATCCTGGAGGAGATGAAGAAGCCCACAGAG
GATATGTGTCTGTCTGACCACCAGGTATTAAGGGTCATGGAAGGGCCAGT
GCTGAGGACATTTCTCGTGTTACCAGAAGGACTTGTGAATTCTAGAAAGG
GCCTCCTGTGAGGCTAAAAAAATACCATGGGGTTTTTTCTCCCCAGCCCC
TGGCTGAATTCACAAGCAACCCTGGGTTGACACTGTCCCAAAAAGGCTTT
CTCAAATTGGTTGGCCCATCCGGAAGAGTCCTTCCCACTTTTGGGAAAAA
GGCTAGGTTTTGACCTTTCCCAAAAGGTTCCTACCCTAGAAACCTGCGGG
AGGAACCTTTTTTTCCATGTGACAGTCTGGAAAAAAGTCAAAACCCGCCG
GTTCGCTTTGCTAAAGGTGGAATCCCATGATCCTGGTTGGCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_b19.b1 MSMg01no134_b19.b1 CHROMAT_FILE:
MSMg01no134_b19.b1 PHD_FILE: MSMg01no134_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:11 2005
         (264 letters)



>mm_chr10_127739890_127740553
          Length = 664

 Score =  491 bits (254), Expect = e-143
 Identities = 260/262 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggccacgggctcatcctagccaatcagaaagagccaggtacaggcagcgcctgagaag 60
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 462 ggggccacgggctcatcccagccaatcagaaaaagccaggtacaggcagcgcctgagaag 403

                                                                       
Query: 61  gagagtgacgtagcctccgccaaaacaaggttacggaatgccaccggggacaaactgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gagagtgacgtagcctccgccaaaacaaggttacggaatgccaccggggacaaactgaat 343

                                                                       
Query: 121 caggcgcggatctatttggtgttacgaaaagtaatcccttcgctctcaggctttgttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caggcgcggatctatttggtgttacgaaaagtaatcccttcgctctcaggctttgttaag 283

                                                                       
Query: 181 caaaattaactttagactttgaagccaagcttttacgctccctgaataagaactagacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 caaaattaactttagactttgaagccaagcttttacgctccctgaataagaactagacta 223

                                 
Query: 241 aaggggcgccagaggctaagca 262
           ||||||||||||||||||||||
Sbjct: 222 aaggggcgccagaggctaagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no134_b19.g1 MSMg01no134_b19.g1 CHROMAT_FILE:
MSMg01no134_b19.g1 PHD_FILE: MSMg01no134_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:12 2005
         (694 letters)



>mm_chr10_127555660_127556753
          Length = 1094

 Score = 1311 bits (678), Expect = 0.0
 Identities = 690/694 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctagagtgagagaatggagccattgccaggtcctcatcgtcccgtctcacctctcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctagagtgagagaatggagccattgccaggtcctcatcgtcccgtctcacctctcctc 260

                                                                       
Query: 61  ccccccacccttttctgtttttgaatcccagcccaagcagaggtgctttccaagtcattt 120
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagcacccttttctgtttttgaatcccagcccaagcagaggtgctttccaagtcattt 320

                                                                       
Query: 121 gaggagaaatgacttcccttgtggtttacaggccagaaacaagaggaagcaagacaccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggagaaatgacttcccttgtggtttacaggccagaaacaagaggaagcaagacaccaa 380

                                                                       
Query: 181 gagcttgaagcagaaggacactaagaagaaattgaaggtatgcacacgaatacatgtccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcttgaagcagaaggacactaagaagaaattgaaggtatgcacacgaatacatgtccc 440

                                                                       
Query: 241 aagtgtaattttattttcccagggtacattatgcatgctatacaagcactcaaccacaga 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 aagtgtaattttattttcccagggtacattatgcatgctagacaagcactcaaccacaga 500

                                                                       
Query: 301 gctgagttctgctctcaagtctgtttgtaaagcaccacagaggttctccaagtgcactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgagttctgctctcaagtctgtttgtaaagcaccacagaggttctccaagtgcactgt 560

                                                                       
Query: 361 gtcagtgcgacagatagatcttggactcgagtgtgaggtcctaggaccaggcgcggctgg 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcagtgcgacagttagatcttggactcgagtgtgaggtcctaggaccaggcgcggctgg 620

                                                                       
Query: 421 acgggtcctcacgcgctgacgtgtgtcttcctctctgggtgggcaggctgagaaagagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acgggtcctcacgcgctgacgtgtgtcttcctctctgggtgggcaggctgagaaagagaa 680

                                                                       
Query: 481 gatgaagacaaagcaggaaaagctgaaggaaaaggtaaagcgagaaaagaaagaaaaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatgaagacaaagcaggaaaagctgaaggaaaaggtaaagcgagaaaagaaagaaaaggt 740

                                                                       
Query: 541 aaaagcgaaggggaaggaagggcccagagccaggccatcctgtagagcagacaagaccct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaagcgaaggggaaggaagggcccagagccaggccatcctgtagagcagacaagaccct 800

                                                                       
Query: 601 tgccacacagaagcggctagaggagcagcagaggcagcaggctatcctggaggagatgaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgccacacagaagcggctagaggagcagcagaggcagcaggctatcctggaggagatgaa 860

                                             
Query: 661 gaagcccacagaggatatgtgtctgtctgaccac 694
           ||||||||||||||||||||||||||||||||||
Sbjct: 861 gaagcccacagaggatatgtgtctgtctgaccac 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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