BAC Information

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BAC

Clone NameMSMg01-134G13
Chromosome10 (Build37)
Map Location 109,204,542 - 109,205,237
singlet/doubletsinglet
Overlap geneNav3
Upstream geneSyt1
Downstream geneLOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134G13.T7 (MSMg01no134_g13.b1)MSMg01-134G13.TJ (MSMg01no134_g13.g1)
ACCAG341131AG341132
length1,2071,195
length of high quality
(start - end)		696 (90 - 785)354 (88 - 441)
definitionCHROMAT_FILE: MSMg01no134_g13.b1 PHD_FILE: MSMg01no134_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:47 2005CHROMAT_FILE: MSMg01no134_g13.g1 PHD_FILE: MSMg01no134_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCAATTCTTTTNNTNACATTCGGCGCTNXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCACTCCCTAGAACCACCCCTATAAAAGCTGAAAGCAG
CCACACTAACCTGAGAGTTACCCTGATCAGCATGGCAGCTTCTGTTCAGC
TTGATGAAAGAAAAGAGTGAAAGAATTCTGCTCAATTGCACCATCCGTCT
TCTAGGACTCTCCCCGTATTTTATAAATAGTGACATCTGAAATGTGTTAT
CATGGGGCACTTCAGATAATATCATGATAAAGGCAGTGAGATTAACTTTG
TGTCTAGTACTTAGCTAGAGAGGAAAGAGTGACATCCCTCTGAGGCAACA
TTGTCATAAGATACAAGACTTTAACAAATATGGAAGTATCATGTTTACAC
TTTATCACCCCAAGTTCATCACAGTGCCTCTGACAGCCATGTTTTTTTCT
AGCTTTGCACTCAATCCTCTCATTTTATTAGAGTGCATGCCTATTTAGAT
CTGAAACAAGAAATATTTCAGAACCGAGGTAATAGAAAGAGCTAAAGAGC
ATTCATGATTTACATTTGGCTTTGGACGTGTTCTCAGGTGAAAATATTCA
AACGAGCATATTTGCGTGTTTCTCTTTAATCAGGGAAGACAGACGATGCC
AAAGCTTCCGAGAAAGGGAAAACTCCTCTTAAAGGATCATCCTTACAAAG
GTCTCCTTCAGATGCAGGGAAAAGCAGCGGGGATGAAGGGAAAAAGCCAC
CGTCAGGCATTGGAAGATCGACAGCCAGCAGTTCTTTTGGATACAAGAAG
CCAAGTGGTGTAGGGGCTTCCACTATTGATACCAGCAGCGGTGCCACCAT
CACAAGCGGTTCAGCTACACTGGGGAAAAACCCCCAATCCGCTGCCATTG
GTGGGAAAGTCCAGGCAGGAAGGAAAAACCACCCTGGACGGGTCCCACAA
ACAAAAAAAAGTTGTTCCTGCCCGTGAGACTCAAATAACACCCCCCCCGT
ACCGAAATTTTGTCCCCGCCCTTTTTAATCCCACACCAGCGGAAACCCCT
GTGAAAAGGGGGCCCCAGTTCCTAATACCACCAACATTGGTTTTTAATTG
TTCCTCGCAAATCTAACTGGGGGGCCCCCCCCCCCACTCTCAAAAAACCA
AATTAAAATGGTTTCTAGGGGCTTGATATCCTGTCCTTTGTAAACAAAAA
GAAAAAA

CCGCTCTTTTTTAAAGCAAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGAGTCGTTCTGAGCCCCAT
TTTTAATGGGGTTATCCGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTA
TATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCT
TTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACAGTGTCTTTTGCCT
TGCAGAAGCTTTGGAGTTTCATGAGGTCCTATTTGTCAATTCTCGATCTT
ACAGCACAAGCCATTGCTGTTCTAATCGGCCATCACTGGAAAGAGAGGCC
CATTGGACACGCAAACTCTATATGCCCCAGTACAAGGGAACACCAGGGCC
AAAATTATGGGAATGGGTGGGTAGGGAAGTGGGGGGGNNNTNNNNTTNCC
CCTCTTTTTNTTTTTTCCTCTTTTTTTTTTTTNTTTTTCTTTTTTTTTTT
TTTTCTTTTTTTTTTTTTTCCTTTTCCTTTTTTTCTCTTTTCTTTTCTTT
TTTTTTTTCCTCTCTTTTTTCCTTTCTCTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTCTTTTTTTTTTTTTCTTTCTTTTTTTTCTTCTTTTTTTTTTCT
TCTTCTCTTTTTTTTTTTTTTCTTTTCTTCTTTTTTCTTCTTTTTCTCTT
TTTTTTTCTCTTCTTCTTTTTTTCCTTTCTTTTTTTTTTTTCTCTTTTTT
CTTCTTTCTTTTTTCTTTTTCNCTTCTTTTTTTTTTCTTCTTTTCTCCTT
TTTCTTTTTTTTCTTTTTTTTCCTTCTCTCTTTCTTTTTTCTCTCTTTTT
CTTTTTTTTTTTTTCTTTTTTTTTTCTTTTTCTCTTTTCTTTTTTTCTTT
CTCTTTTTTTTTTTTTTTTTTTTCCTTTCTTTCTTCTTTTTTTTCTTTTT
NTTTTTTTTTTTTCTCTCTTCTTTTTCTTTTTCCCTCTTCTTTTTTTTTC
TTCTTTTTTCTTCTTTTCTTTTTTCTCCTTTTTTTCTCTCTTTTCCCTTT
CTCTCTTTTTCCTTCTTTCTTCTTCTTTTTTCTTTTTTCTCTTCTTTCTT
TTTTTTTTTTTTTTTTCCTTTTCTTTCTTTTCTTTTTCTTTCTCCTCTTT
CTTTTTTTCTTTTTTTTCTTTCCTCCTCTTTCTCTTCTCTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_g13.b1 MSMg01no134_g13.b1 CHROMAT_FILE:
MSMg01no134_g13.b1 PHD_FILE: MSMg01no134_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:47 2005
         (696 letters)



>mm_chr10_109204342_109205437
          Length = 1096

 Score = 1222 bits (632), Expect = 0.0
 Identities = 680/696 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgaaagcagccacactaacctgagagttaccctgatcagcatggcagcttctgttcag 60
           ||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||
Sbjct: 896 gctgaaagcagccacactaacctgagagttacagtgctcagcatggcagcttctgttcag 837

                                                                       
Query: 61  cttgatgaaagaaaagagtgaaagaattctgctcaattgcaccatccgtcttctaggact 120
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 836 cttgatgaaagaaaagagtgaaagaatcctgctcaattgcaccatccatcttctaggact 777

                                                                       
Query: 121 ctccccgtattttataaatagtgacatctgaaatgtgttatcatggggcacttcagataa 180
           |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 776 ctccccatattttataaatagtgtcatctgaaatgtggtatcatggggcacttcagataa 717

                                                                       
Query: 181 tatcatgataaaggcagtgagattaactttgtgtctagtacttagctagagaggaaagag 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tatcatgataaaggtagtgagattaactttgtgtctagtacttagctagagaggaaagag 657

                                                                       
Query: 241 tgacatccctctgaggcaacattgtcataagatacaagactttaacaaatatggaagtat 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 656 tggcatccctctgaggcaacattgtcataagatacaagactttaacaaatatggaagtac 597

                                                                       
Query: 301 catgtttacactttatcaccccaagttcatcacagtgcctctgacagccatgtttttttc 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 catgtttacactctatcaccccaagttcatcacagtgcctctgacagccatgtttttttc 537

                                                                       
Query: 361 tagctttgcactcaatcctctcattttattagagtgcatgcctatttagatctgaaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tagctttgcactcaatcctctcattttattagagtgcatgcctatttagatctgaaacaa 477

                                                                       
Query: 421 gaaatatttcagaaccgaggtaatagaaagagctaaagagcattcatgatttacatttgg 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaaatatttcagaaccgaggtgatagaaagagctaaagagcattcatgatttacatttgg 417

                                                                       
Query: 481 ctttggacgtgttctcaggtgaaaatattcaaacgagcatatttgcgtgtttctctttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctttggacgtgttctcaggtgaaaatattcaaacgagcatatttgcgtgtttctctttaa 357

                                                                       
Query: 541 tcagggaagacagacgatgccaaagcttccgagaaagggaaaactcctcttaaaggatca 600
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 356 tcagggaagacagatgatgccaaagcttccgagaaagggaaaactcctctcaaaggatca 297

                                                                       
Query: 601 tccttacaaaggtctccttcagatgcagggaaaagcagcggggatgaagggaaaaagcca 660
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tccttgcaaaggtctccttcagatgcagggaaaagcagcggggatgaagggaaaaagcca 237

                                               
Query: 661 ccgtcaggcattggaagatcgacagccagcagttct 696
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ccgtcaggcattggaagatcgacagccagcagttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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