BAC Information

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BAC

Clone NameMSMg01-134G14
Chromosome10 (Build37)
Map Location 67,248,170 - 67,347,819
singlet/doubletdoublet
Overlap geneLOC100039618
Upstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081
Downstream geneZfp365, Plekhk1, Arid5b, LOC100040136, 1700040L02Rik, EG665342, Tmem26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134G14.T7 (MSMg01no134_g14.b1)MSMg01-134G14.TJ (MSMg01no134_g14.g1)
ACCAG341133AG341134
length1,2391,267
length of high quality
(start - end)		752 (87 - 838)424 (74 - 497)
definitionCHROMAT_FILE: MSMg01no134_g14.b1 PHD_FILE: MSMg01no134_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:47 2005CHROMAT_FILE: MSMg01no134_g14.g1 PHD_FILE: MSMg01no134_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,248,170 - 67,248,918)(67,347,405 - 67,347,819)
sequence
NCCCTTTTTTTTNTTNACAATGGGCGCTATGACTCCTATAGGGAGAGGAT
CCGCGGAATTCCATAGACACAGGAATGCCTTTATTTTACTGCATGTTTAT
TTAATCATTGAAGGTGTGCGTAAGGAAGTGGGCAAGTGGAACTTAGAGGT
CAGTTTTCTCCTCCCATCTTGTGAGTCTTTGAGAAGTGAACTCATTAGTG
TTGACATCAAGTGTCTTTACCCACTGGGCCATCCTGCCAGCCTCCATTAG
TCCTTCTTAATCATGGAATTCTGGCTTCTACCCCATTTAATGGGACTACT
TGACAGTGTGCTGCATAGTAACTCTCTTAGTCACAGGTTGCTCTTACTGT
TACTTAGGAACACCATGGAATCGTACCCACTGGAAGTACTCCAAGCTCCA
AACTCCAAATTCTGAGTCATCTGCTTGGGTTATAAAGTCAACAGTCACAG
ACTGGCCTTGCATCACTGGACCCAAACCTTTGACCTAACTTTCCCGTCTA
AGGTGAAGAGAAAATGACAAAGCAGTTAGCTTTAACCCAGCTTATCTGTT
TGGCATTGCTGCAAGAGAGCACTTGAGACTTGGTTACTTAACATAAAGAG
AACAGCACTTGGCTCAGAGCTCCCGGAGTCCGAGACATACACGACTGAAG
TGTCCCTTCAAGCTAGGTCCTTCTGCTTTTTAAAACATTGCAGGATACAA
TACATCATGAGAGGACACACCTAAGAGAGGAGGAGAACTAAGCCTGGTTC
TTAACAAACCCACTGTCATGCTAACGAATCCACTCCCAGGATGGCGAGTC
TACTTGTGAGCAAAGAATCCTTATGACCTGGCTATTGGTTAGCCACTTGG
TGAAGATCCTGCCAACTAAAATCTAACAGGGAAGCTTATGATTCCAGTAA
AGAGCAGGGAGTAGAGTGTTTCTGAACAGCACAGAGTTTTTGAGCAGAGG
TACCTATTAACGGAATTTAAGAGCGATCCCGGCCGACCTTAAATAAAAAA
ATCGGTTTTTTTTTTTCACTTTGTCAAGATCTGAAAGGTACCTGTGTGGG
ATTATTTTTTGTTCCAATTTTTTTCCAATGGTTCCGTTTGGCCTTTGGTT
TAAAACCTATATAATAAAGGGGCTATTGGGTGAATCTTATAAACTCCCCC
GTTGTTGTGGTGTTTTTGTTTTTTATTAAATGAAACCCTATATTTTCTTT
CTTCTATATAAATTGTTCAACCCTAGCTCGTCTACTCCT

CTCTTCTTTTTTTAACAAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTTAGGGCATCCTCAGACACATCGC
AAGTTCAAGGCCAACCCTGGGATACATGAGAGGCTCCGGGAACAGAGAGA
AAGAAAGAATTTAGATGGGAAGGAAGGGAGGGAGGAAAGAAGGACGGACA
AAACCCTTCAGACGCTTGCAACACTGAATATCCACAGAGCACACAATGAA
CTCGACACTGCGCAGAACTCACAACAAGCCCCGACGTCACAATTTAGGCC
TTTAAATGATAAACTTTAGAGGTGGCACAAACCTTGGTGACTTGGAGTTA
GCATTTCTTAGCTAGGACCATGTGCCACAAGAGAAAACACTGACAAACTT
ACTCTTCTCAAAACACAAAACTTGATGAATAAATTGTTGGGAAAATGAAA
CAGACATGGGCTGTCAGACATGTTTTGTTTTGGGGGGTTGTTTGTTTGTT
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTCTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTT
TTTTTTTTTTNNTTTTTCTTTTTTTTCTTTTTTTTCTTTTCCTTTTCCCT
TCCTTCTTCTCTTCTTTCCTTTCTTNTTTTCTCTTTTCTCTTCTTTTCTT
TTTTTTTTTTCTTTTTCTTCTTCTCTTTCTCTCTTTNTTTTCCTTTTTTT
CTTTTCTTTTTCTTTTTTTTTCTTCTTTCTTCCTTTNTTTCTNCTCTCCT
TTTCTTCTCCCTTTTCTTCCTTTTTCTTTTNCTCCTTCTTTTTTCCTTCT
TTTCNTTTCTTTTTTTTTTCTTTCTCCCCTTCCCCTTCTTTTTCTCTCTC
TTTCTCCTTTCCTCTTCTTCTTTTCTTCCTCCTTTTTCTTCTCTCTTCTC
CTTCCTTTCTTCCTCTTTCCTTTCTCCCTTTTTCTTTCTCTTNTCCTTCC
TTNTCTCTTTNTTCTTCTTTCTCTCTCTTTTCCCTTCTCTCTCTTTTTCT
TCCTTNTCTTCTCTCTCCTCTTTTTTCNTTCTCTCTTCTTCTTCTCTCCT
TCCTTCCCTNCCTTTTTTCTTTTCNTTTCTCTTCTTCCTTTTCTCCTCTT
CTCTTCTTCCTCCTCTCTTTCTTTTTNCTCCTTTTCTTTCTCTTCCTCTC
TTCCCCTCTTTCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_g14.b1 MSMg01no134_g14.b1 CHROMAT_FILE:
MSMg01no134_g14.b1 PHD_FILE: MSMg01no134_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:47 2005
         (752 letters)



>mm_chr10_67247970_67249121
          Length = 1152

 Score = 1402 bits (725), Expect = 0.0
 Identities = 743/749 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgcatgtttatttaatcattgaaggtgtgcgtaaggaagtgggcaagtggaacttag 60
           ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 201 tactgcacgtttatttaatcattgaaggtgtgtgtaaggaagtgggcaagtggaactcag 260

                                                                       
Query: 61  aggtcagttttctcctcccatcttgtgagtctttgagaagtgaactcattagtgttgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtcagttttctcctcccatcttgtgagtctttgagaagtgaactcattagtgttgaca 320

                                                                       
Query: 121 tcaagtgtctttacccactgggccatcctgccagcctccattagtccttcttaatcatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagtgtctttacccactgggccatcctgccagcctccattagtccttcttaatcatgg 380

                                                                       
Query: 181 aattctggcttctaccccatttaatgggactacttgacagtgtgctgcatagtaactctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattctggcttctaccccatttaatgggactacttgacagtgtgctgcatagtaactctc 440

                                                                       
Query: 241 ttagtcacaggttgctcttactgttacttaggaacaccatggaatcgtacccactggaag 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagtcacaggttgctctgactgttacttaggaacaccatggaatcgtacccactggaag 500

                                                                       
Query: 301 tactccaagctccaaactccaaattctgagtcatctgcttgggttataaagtcaacagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactccaagctccaaactccaaattctgagtcatctgcttgggttataaagtcaacagtc 560

                                                                       
Query: 361 acagactggccttgcatcactggacccaaacctttgacctaactttcccgtctaaggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagactggccttgcatcactggacccaaacctttgacctaactttcccgtctaaggtga 620

                                                                       
Query: 421 agagaaaatgacaaagcagttagctttaacccagcttatctgtttggcattgctgcaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagaaaatgacaaagcagttagctttaacccagcttatctgtttggcattgctgcaaga 680

                                                                       
Query: 481 gagcacttgagacttggttacttaacataaagagaacagcacttggctcagagctcccgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 gagcacttgagacttggttacttaacataaagagaacagcacttggctcagagctccagg 740

                                                                       
Query: 541 agtccgagacatacacgactgaagtgtcccttcaagctaggtccttctgctttttaaaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtccgagacatacacgactgaagtgtcccttcaagctaggtccttctgctttttaaaac 800

                                                                       
Query: 601 attgcaggatacaatacatcatgagaggacacacctaagagaggaggagaactaagcctg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attgcaggatacaatacatcatgagaggacacacctaagagaggaggagaactaagcctg 860

                                                                       
Query: 661 gttcttaacaaacccactgtcatgctaacgaatccactcccaggatggcgagtctacttg 720
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gttcgtaacaaacccactgtcatgctaacgaatccactcccaggatggcgagtctacttg 920

                                        
Query: 721 tgagcaaagaatccttatgacctggctat 749
           |||||||||||||||||||||||||||||
Sbjct: 921 tgagcaaagaatccttatgacctggctat 949


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 752
Length of database: 1152
Length adjustment: 10
Effective length of query: 742
Effective length of database: 1142
Effective search space:   847364
Effective search space used:   847364
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no134_g14.g1 MSMg01no134_g14.g1 CHROMAT_FILE:
MSMg01no134_g14.g1 PHD_FILE: MSMg01no134_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:47 2005
         (424 letters)



>mm_chr10_67347080_67347903
          Length = 824

 Score =  748 bits (387), Expect = 0.0
 Identities = 408/415 (98%)
 Strand = Plus / Minus

                                                                       
Query: 10  catcctcagacacatcgcaagttcaaggccaaccctgggatacatgagaggctccgggaa 69
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||
Sbjct: 740 catcctcagacacatcgcaagttcaaggccaacccagggatacatgagaggctatgggaa 681

                                                                       
Query: 70  cagagagaaagaaagaatttagatgggaaggaagggagggaggaaagaaggacggacaaa 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cagagagaaagaaagaatttagatgggaaggaagggagggaggaaagaaggacggacaaa 621

                                                                       
Query: 130 acccttcagacgcttgcaacactgaatatccacagagcacacaatgaactcgacactgcg 189
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 accctgcagacgcttgcaacactgaatatccacagagcacacaatgaactcgacactgtg 561

                                                                       
Query: 190 cagaactcacaacaagccccgacgtcacaatttaggcctttaaatgataaactttagagg 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagaactcacaacaagccccgacgtcacaatttaggcctttaaatgataaactttagagg 501

                                                                       
Query: 250 tggcacaaaccttggtgacttggagttagcatttcttagctaggaccatgtgccacaaga 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggcacaaaccttggtgacttggagttagcatttcttagctaggaccatgtgccacaaga 441

                                                                       
Query: 310 gaaaacactgacaaacttactcttctcaaaacacaaaacttgatgaataaattgttggga 369
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 440 gaaaacactgacaaacttactcttctcaaaacacaaaacttgatgaatgatttgttggga 381

                                                                  
Query: 370 aaatgaaacagacatgggctgtcagacatgttttgttttggggggttgtttgttt 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaatgaaacagacatgggctgtcagacatgttttgttttggggggttgtttgttt 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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