Query= MSMg01no134_j16.b1 MSMg01no134_j16.b1 CHROMAT_FILE:
MSMg01no134_j16.b1 PHD_FILE: MSMg01no134_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:10 2005
(815 letters)
>mm_chr10_101225096_101226310
Length = 1215
Score = 998 bits (516), Expect = 0.0
Identities = 540/548 (98%)
Strand = Plus / Minus
Query: 5 gaattctttaacacccccacacacaacacacacaaaataaaaagagatagcttgtcttct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaattctttaacacccccacacacaacacacacaaaataaaaagagatagcttgtcttct 492
Query: 65 aatactgtaaacaaattttagataatataggacttttggttagtcacattatttctacaa 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aatacggtaaacaaattttagataatataggacttttggttagtcacattatttctacaa 432
Query: 125 taggctttttactttttatcataatcattgctaagtctttgattggaatttagtgaattt 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 431 taggctttttactttttatcataatcattgctaagtctttgattgggatttagtgaattt 372
Query: 185 cataccaattaattgtatgcacagtattgatgtggaatcaataaataaagaacagtgtgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cataccaattaattgtatgcacagtattgatgtggaatcaataaataaagaacagtgtgg 312
Query: 245 ggcgctgagcatggggaaataaaggggtgggaaagatgacccacgtccctccagaacttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggcgctgagcatggggaaataaaggggtgggaaagatgacccacgtccctccagaacttg 252
Query: 305 gggcctctggatggtcagacggggaagactgccacatgctctctacactgtgggaagcca 364
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gggcctctgggtggtcagacggggaagactgccacatgctctctacactgtgggaagcca 192
Query: 365 tggaatcccagttgaaggcaaggggtggagagggagtagtactggggtccctgtgtctca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tggaatcccagttgaaggcaaggggtggagagggagtagtactggggtccctgtgtctca 132
Query: 425 cagaaacgaggaacaacgaaatctagctcttgggtatcacagtacatcgctggacactgc 484
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 131 cagaaacgaggaacaacgggttctagctcttgggtatcgcagtacatcgctggacactgc 72
Query: 485 agaagtgctgagaactggtggagaccccaaggcaatacagttagctctggggctaaaggg 544
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 71 agaagtgctgagaactggtggggaccccaaggcaatacagttagctctggggctaaaggg 12
Query: 545 aaaaaggg 552
||||||||
Sbjct: 11 aaaaaggg 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 815
Length of database: 1215
Length adjustment: 10
Effective length of query: 805
Effective length of database: 1205
Effective search space: 970025
Effective search space used: 970025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_j16.g1 MSMg01no134_j16.g1 CHROMAT_FILE:
MSMg01no134_j16.g1 PHD_FILE: MSMg01no134_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:10 2005
(305 letters)
>mm_chr10_101168900_101169604
Length = 705
Score = 484 bits (250), Expect = e-141
Identities = 294/314 (93%), Gaps = 12/314 (3%)
Strand = Plus / Plus
Query: 1 attttaaccactggcaccaataacacttgagtttctcctaactgatttggagttttgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttaaccactggcaccaataacacttgagtttctcctaactgatttggagttttgtcc 260
Query: 61 catctaatgctgtaaagcagttaaaaagtaaaggtaaatgttaaacagaaaactgttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctaatgctgtaaagcagttaaaaagtaaaggtaaatgttaaacagaaaactgttgtt 320
Query: 121 tacagatgggctcctctgaatttaaaatctgtcatcatggaggggaaaaaaaa------- 173
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tacagatgggctcctctgaatttaaaatctgtcatcatggagg--aaaaaaaaaaaaaaa 378
Query: 174 -gacctatc-atgacatcacttcggaagacctaacaagtagctgaatgagccagatgaag 231
|||||| | ||||||||||||| |||||||| |||| |||||||||||| |||||||||
Sbjct: 379 agaccta-ctatgacatcacttcagaagacctgacaaatagctgaatgagtcagatgaag 437
Query: 232 atgtttacacccaaccaatggacagaagctgctgacacctgtggttgagttagggaaaga 291
|||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct: 438 atgtttacacccaaccaatgcacagaagctgctgacgcctatggttgagttagggaaaga 497
Query: 292 atggaagaagttga 305
||||||||| ||||
Sbjct: 498 atggaagaaattga 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
