MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-134O12
Chromosome	10 (Build37)
Map Location	93,741,194 - 93,741,821
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12
Downstream gene	EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd
Link	Open Mouse BAC browser

Click to get alignment info.

name	Elk3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13713 MGI:101762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100041854 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 1 Protein

name	Lta4h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16993 MGI:96836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hal (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15109 MGI:96010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amdhd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71761 MGI:1919011
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 20 ESTs, 6 Proteins

name	Ccdc38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237465 MGI:2444738
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snrpf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69878 MGI:1917128
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 82 ESTs, 4 Proteins

name	LOC100041873 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Ntn4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57764 MGI:1888978
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667338 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 218 ESTs, 5 Proteins pseudo : _no_value

name	LOC100041907 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 449 ESTs, 6 Proteins pseudo : _no_value

name	Usp44 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:327799 MGI:3045318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Metap2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56307 MGI:1929701
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vezt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215008 MGI:2143698
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fgd6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13998 MGI:1261419
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nr2c1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22025 MGI:1352465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufa12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66414 MGI:1913664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG215472 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215472 MGI:3648918
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041955 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041955
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Tmcc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319880 MGI:2442900
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667315 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667315 MGI:3649017
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs

name	4921537D05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77048 MGI:1924298
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Plxnc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54712 MGI:1890127
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cradd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12905 MGI:1336168
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Elk3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305022 GeneID:13713 MGI:101762
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELK3, member of ETS oncogene family transcript_id : NM_013508.1

name	Elk3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45383917 GeneID:13713 MGI:101762
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELK3, member of ETS oncogene family transcript_id : NM_205536.1

name	LOC100041854 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261015 GeneID:100041854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 1 Protein product : similar to Ubtf protein transcript_id : XM_001477121.1

name	Lta4h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116734869 GeneID:16993 MGI:96836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leukotriene A4 hydrolase transcript_id : NM_008517.2

name	Hal (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981709 GeneID:15109 MGI:96010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histidine ammonia lyase transcript_id : NM_010401.3

name	Amdhd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388541 GeneID:71761 MGI:1919011
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 20 ESTs, 6 Proteins product : amidohydrolase domain containing 1 transcript_id : XM_125854.4

name	Ccdc38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802738 GeneID:237465 MGI:2444738
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 38 transcript_id : NM_175488.4

name	Snrpf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388566 GeneID:69878 MGI:1917128
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 82 ESTs, 4 Proteins product : small nuclear ribonucleoprotein polypeptide F transcript_id : XM_892627.2

name	LOC100041873 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261017 GeneID:100041873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical protein LOC100041873 transcript_id : XM_001477148.1

name	Ntn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328256 GeneID:57764 MGI:1888978
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : netrin 4 transcript_id : NM_021320.2

name	Usp44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344982 GeneID:327799 MGI:3045318
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 44 transcript_id : NM_183199.2

name	Metap2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83779008 GeneID:56307 MGI:1929701
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : methionine aminopeptidase 2 transcript_id : NM_019648.3

name	Vezt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365165 GeneID:215008 MGI:2143698
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vezatin, adherens junctions transmembrane protein transcript_id : NM_172538.3

name	Fgd6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37693996 GeneID:13998 MGI:1261419
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FYVE, RhoGEF and PH domain containing 6 transcript_id : NM_053072.2

name	Nr2c1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982759 GeneID:22025 MGI:1352465
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 2, group C, member 1 transcript_id : NM_011629.2

name	Ndufa12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354746 GeneID:66414 MGI:1913664
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 transcript_id : NM_025551.2

name	EG215472 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374877 GeneID:215472 MGI:3648918
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG215472 transcript_id : NM_174999.2

name	LOC100041955 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261020 GeneID:100041955
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100041955 transcript_id : XM_001477257.1

name	Tmcc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78771619 GeneID:319880 MGI:2442900
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane and coiled coil domains 3 transcript_id : NM_172051.2

name	EG667315 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388569 GeneID:667315 MGI:3649017
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs product : predicted gene, EG667315 transcript_id : XM_989715.1

name	4921537D05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430700 GeneID:77048 MGI:1924298
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs product : RIKEN cDNA 4921537D05 gene transcript_id : NM_027479.1

name	Plxnc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9055375 GeneID:54712 MGI:1890127
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : plexin C1 transcript_id : NM_018797.1

name	Cradd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892137 GeneID:12905 MGI:1336168
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CASP2 and RIPK1 domain containing adaptor with death domain transcript_id : NM_009950.2

name	Elk3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45383918 GeneID:13713 MGI:101762
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0050875 - cellular physiological process [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]; GO:0042060 - wound healing [Evidence IMP] codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant 2 product : ELK3, member of ETS oncogene family isoform b protein_id : NP_991099.1

name	Elk3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305023 CCDS:CCDS24124.1 GeneID:13713 MGI:101762
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0050875 - cellular physiological process [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]; GO:0042060 - wound healing [Evidence IMP] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant 1 product : ELK3, member of ETS oncogene family isoform a protein_id : NP_038536.1

name	LOC100041854 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261016 GeneID:100041854
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477171.1

name	Lta4h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116734870 CCDS:CCDS24125.1 GeneID:16993 MGI:96836
definition	EC_number : 3.3.2.6 GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0004301 - epoxide hydrolase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004463 - leukotriene-A4 hydrolase activity [Evidence IEA]; GO:0004179 - membrane alanyl aminopeptidase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence ISS] [Evidence IEA] GO_process : GO:0006954 - inflammatory response [Evidence ISS]; GO:0019370 - leukotriene biosynthesis [Evidence IEA] [Evidence ISS]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : LTA4 hydrodase product : leukotriene A4 hydrolase protein_id : NP_032543.2

name	Hal (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754152 GeneID:15109 MGI:96010
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0016211 - ammonia ligase activity [Evidence IEA]; GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA] GO_process : GO:0009058 - biosynthesis [Evidence IEA]; GO:0006548 - histidine catabolism [Evidence IEA]; GO:0006547 - histidine metabolism [Evidence IEA] codon_start : 1 note : histidinemia product : histidine ammonia lyase protein_id : NP_034531.1

name	Amdhd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20865128 GeneID:71761 MGI:1919011
definition	codon_start : 1 product : amidohydrolase domain containing 1 protein_id : XP_125854.1

name	Ccdc38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541988 CCDS:CCDS24127.1 GeneID:237465 MGI:2444738
definition	codon_start : 1 product : coiled-coil domain containing 38 protein_id : NP_780697.2

name	Snrpf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83027678 GeneID:69878 MGI:1917128
definition	codon_start : 1 product : small nuclear ribonucleoprotein polypeptide F protein_id : XP_897720.1

name	LOC100041873 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261018 GeneID:100041873
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477198.1

name	Ntn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946626 CCDS:CCDS24128.1 GeneID:57764 MGI:1888978
definition	GO_component : GO:0005604 - basement membrane [Evidence ISS] [Evidence IDA] GO_process : GO:0016322 - neuron remodeling [Evidence IDA] codon_start : 1 exception : mismatches in translation note : beta-netrin product : netrin 4 protein_id : NP_067295.1

name	Usp44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147264 CCDS:CCDS24129.1 GeneID:327799 MGI:3045318
definition	GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ubiquitin specific peptidase 44 protein_id : NP_899022.1

name	Metap2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9789873 GeneID:56307 MGI:1929701
definition	EC_number : 3.4.11.18 GO_function : GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008235 - metalloexopeptidase activity [Evidence IEA]; GO:0004239 - methionyl aminopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : eIF-2-associated p67; initiation factor 2-associated protein (p67); peptidase M 2 product : methionine aminopeptidase 2 protein_id : NP_062622.1

name	Vezt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542087 GeneID:215008 MGI:2143698
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_process : GO:0016337 - cell-cell adhesion [Evidence IMP]; GO:0043009 - embryonic development (sensu Vertebrata) [Evidence IMP] codon_start : 1 product : transmembrane protein vezatin protein_id : NP_766126.2

name	Fgd6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37693997 GeneID:13998 MGI:1261419
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : ethanol decreased 4 product : FYVE, RhoGEF and PH domain containing 6 protein_id : NP_444302.3

name	Nr2c1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982760 CCDS:CCDS24131.1 GeneID:22025 MGI:1352465
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0042826 - histone deacetylase binding [Evidence IPI]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence ISS] [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : early embryonic nuclear receptor; 80-3 cNDA; orphan receptor, TR2-11; nuclear receptor subfamily 2, group H, member 1 product : nuclear receptor subfamily 2, group C, member 1 protein_id : NP_035759.2

name	Ndufa12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27228985 CCDS:CCDS24132.1 GeneID:66414 MGI:1913664
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0009055 - electron carrier activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : 13kDa differentiation-associated protein protein_id : NP_079827.2

name	EG215472 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33239389 GeneID:215472 MGI:3648918
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC215472 protein_id : NP_778164.1

name	LOC100041955 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261021 GeneID:100041955
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477307.1

name	Tmcc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78771620 CCDS:CCDS24134.1 GeneID:319880 MGI:2442900
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : transmembrane and coiled coil domains 1 product : transmembrane and coiled coil domains 3 protein_id : NP_742048.2

name	EG667315 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388570 GeneID:667315 MGI:3649017
definition	codon_start : 1 product : hypothetical protein protein_id : XP_994809.1

name	4921537D05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430701 GeneID:77048 MGI:1924298
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC77048 protein_id : NP_081755.1

name	Plxnc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055376 GeneID:54712 MGI:1890127
definition	codon_start : 1 exception : unclassified translation discrepancy note : viral-encoded semaphorin protein receptor product : plexin C1 protein_id : NP_061267.1

name	Cradd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753516 CCDS:CCDS24135.1 GeneID:12905 MGI:1336168
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0030693 - caspase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IMP]; GO:0006508 - proteolysis [Evidence IEA]; GO:0042981 - regulation of apoptosis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : CASP2 and RIPK1 domain-containing adaptor with death domain product : CASP2 and RIPK1 domain containing adaptor with death domain protein_id : NP_034080.1

name	LOC667338 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261118 GeneID:667338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 218 ESTs, 5 Proteins product : similar to ribosomal protein L29 pseudo : _no_value transcript_id : XR_035700.1

name	LOC100041907 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261019 GeneID:100041907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 449 ESTs, 6 Proteins product : similar to farnesyl pyrophosphate synthase pseudo : _no_value transcript_id : XR_033108.1

clone name	MSMg01-131O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524L08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-134O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469G14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-345F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300F20
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-134O12.T7 (MSMg01no134_o12.b1)	MSMg01-134O12.TJ (MSMg01no134_o12.g1)
ACC	AG341505	AG341506
length	1,181	1,551
length of high quality (start - end)	703 (40 - 742)	---
definition	CHROMAT_FILE: MSMg01no134_o12.b1 PHD_FILE: MSMg01no134_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:48 2005	CHROMAT_FILE: MSMg01no134_o12.g1 PHD_FILE: MSMg01no134_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:48 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NCCGCTTATTNNNNTACAGTGGGCGCTAACACTCACTAAGGGAGAGGATC CGCGGAATTCCCATGGAACCTGTGCCTTTAAAACATTATTTGCTGTTTAT CTGAAAATACAGATTCAACTAGGTGTCCTGCGCCTTTATTGGCTAAATAT GGCAGGTCTGTTTCCTGAGGAACATGGTTTTTTGTTCTCCTTGGAGACTG CCTTCCTTCTCTGTGCCTATCAGCTCAATGATTTGAGGAGTCAGAAACCA GAAAATTAATCCCAGCCCACCCCTTTGTGCCAAACACCCACAGGGCCATG TTATTTATTCCAGTGCACAGGAGCACACATATCCTGTGTGTGTGCATCCA CACCCCACCTTCAACCACACACACACACACACACACACACACACACACAC ATATTTTCACAAACACACACATGCTCGAATGCTTTTAAAGGATGAAGGGA TTTTTAGCATCCCAAAACACAACCCTTCATTCTGTTCTGACTTTCATGGC TTTCCCAAACCGTATTTTTTCCCTTCTGGTTAGTTCCTGGCTCCTCTAGA AAAAACCTATAACTGCAGCACGGCTCATATTTTGAGTGCATGACCAGGCT TCCACTACAGAAGGCTGCCGATGAGCCTTTATCAGTTGTCTTCCAGGACA TTTGAATTTTTCATTATTTGCCACTCACTGGGCAAAACTGCCCATCTGAA TAGAAAGAGAACAAATGTTGTACTGGGGTCAAATAATGAATGCAACTCAG TGACAAGGGAAAGTGAAACATTTGTGACGCCTAATATGGAGCCTTCTAAT TAAATGATGACTTGCAAGTTGGAGGAGAAGAAATAAATTAAGAATGATTG ATATAACGATAGTATTATATTATGTAAGATTTTATGTATCAATAATTATT GATCGAACTATTTATTGATTTTACTAATTAACTATTTTCGCCTTATTTTT TTATTTTCTTCTCCTTTNTTTATTTTTTTCTCTTCTTCTTCTCTCTATTT TCTTCTCTCCTTCTCTATTTTTCTTTATTTACTTCTCTTCTTCTTCTTTC TTTTCTTTTCCTTTTTTTTCATTTCTTTTTTTTTCATTCCCACTTTCTCT TTATTCCTTCTTCTTCTTTCCCTATTACTTCCTCTAAAACCCACTTTCTT TTCCTTCTTTTTTTTTCTTTCTCTTCTTTTT	TTCATATTTTTTTATTAGGAAGGGAGAGGGGGGCGCCTGGTCTTTTAATT TTAGGGGAAAATATAGAAGGATTGGGGGCCCCTTTAAGGGTTGTTGNAGG GGTATAGGGATAAGGAAAGAGGCCCTTTAAAAGGTGTCTTGGAGACACTA GAAGTGTGATGAGTAGATAACCGTGTAGGATTGCATGAGTTTGGAATTTG AATGTTGTATGATTAATGGTATGGTTAAGATGTATGATGAGATGATATTT GTGGGTGGATATGTGGCGTTTGAATATATGAATTTGTGTGTAGGTTTATG CATTATTAAGTTATGCATGTATTTGAAGATTATGTATTTGATTTTTTATA AGAATTATAGTGTGGTTTATGTATTGTATAGAAATCATGCGTTTATGGGA ATAGTAGTTTAATGTTTTGTAGGCTTGTTTCATGGGCTGATGTTTATTTT GTGGTATAAGTGTAGTTGGAAGCTATTTGCTATTTAAGATTAGGATTAAG GACATTGTGAGTATGAATTTTGAGAATTGTGAATGAATGTTCTGATATGT TGTTAGGATTTATATATTTGTTTAGTATAATTTTTTGTATGTTGTGATTT TTTGTGAATTGATATTTTTGTGTTTTTTTTAATTTTTAAAATTTTTAGGT GTATTATAATGTAGATTTTTGTTTTGTATTTATTGTTTTTTTGGATGTAA GAATTTGATTTTTATAATTGGTTGTAGTATGGGTTGATTATATGTGTATT TGTATTGGGATTGATACGATACATGCTTGTGTATTTTGTTTAATGGTGTT TAATGTATGATATAGTAGTTATAATTGGTTGTTAATATTTACTTTTTTGC TATTTTAGTTATATGATATTTTATTTGAGTATGTTTTTAACATGTATTTT ACTGTATGAATGTTATTATATATTTTTTATTTTTATTTGTATTTATAGTT AAGGTGGTAATATATAGTGTTTATTATATTTAATTATATATTATTATTTA TTAGTAATTGTATAAGATGATTTTTATTTTTTGTATTGGAAATATTTATG TAGTTCTTTGTTATATACTTTGAATTAATTGTTTTAAATATACTGTGATT TTTTGAATTATTTATTATTATTTTATTATTTATGATAATGATTGTATTAT CATACATGTTGCTTATTGTGTATTTATTTATAGTTTAATGTGTAATATAT TTTAATATTATGTTTTATAATATTATTGTTTAGTTTTTGTATGTTTTACT ATGTTTGTAACATTTATTATTGTTGTCTGACATTATTTAATATAATTTGA TATTTGATATTAATGTTGTATTTTTATAGATTGTTCTATAATGATGTTTA ATCTGTATATTTAGATGTATTAGTAAATTTATGAAAATTTATTTTTATAA ATGTGTGTATTTTATTCTATTTGTTTTTGTATTTAGTAGTATTTTTGATT TTTTATTTTTGCATATCTATATTCTTATTGTTCTGTGTATGCGTTTAGTG TACTGTTAATATAGATGTTATTATAATATAGTCTGTATTTTGATATATCT T
quality values	Open. Hide. 0 3 11 9 9 11 6 6 7 3 0 0 0 0 3 6 6 6 6 6 8 8 8 8 8 8 8 8 8 11 13 19 23 24 13 13 8 8 8 19 21 37 34 37 37 36 42 42 47 47 50 50 50 53 53 53 43 21 26 13 14 14 22 22 36 31 31 33 30 27 19 12 9 9 9 9 13 12 11 14 19 26 31 39 37 33 33 33 36 36 57 53 53 53 53 42 37 42 38 38 38 57 57 53 59 33 33 33 33 33 21 27 11 12 11 11 10 16 16 19 23 25 31 31 31 31 33 30 22 19 10 10 10 10 10 16 21 30 33 33 50 33 33 36 36 38 53 53 53 53 53 59 59 59 57 57 57 57 57 57 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 54 59 59 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 59 59 59 57 57 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 54 52 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 68 59 59 59 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 54 59 59 59 59 68 68 59 59 59 59 59 59 48 48 48 48 48 48 59 57 57 59 59 48 48 48 59 59 59 48 47 36 34 28 19 18 11 10 10 10 10 10 12 12 12 24 30 47 48 48 48 48 48 59 59 59 59 48 47 47 43 43 43 48 48 57 57 57 57 59 59 59 59 59 59 54 54 50 53 50 50 48 47 41 41 41 48 48 54 59 59 47 43 43 44 57 57 68 68 68 68 68 68 68 68 68 68 59 59 47 57 57 59 59 59 59 59 59 59 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 50 52 52 59 52 54 54 59 57 57 57 57 57 57 68 68 57 57 54 54 54 59 57 52 52 52 52 52 50 47 47 47 59 59 57 57 54 57 57 57 68 68 68 57 57 54 54 54 57 57 57 57 57 57 57 57 57 54 54 54 57 44 42 37 35 44 35 39 39 43 41 41 43 47 48 54 54 54 54 54 48 46 39 39 39 41 39 40 43 46 43 57 40 40 30 28 28 43 40 43 40 43 47 57 57 43 43 36 36 28 32 20 23 23 37 37 59 59 41 39 39 32 32 26 27 32 39 47 47 34 34 28 30 28 36 36 33 36 42 47 43 43 43 39 40 30 39 39 59 43 57 50 53 53 53 57 48 59 47 42 42 47 27 21 10 10 10 21 23 57 48 50 48 48 40 41 36 30 30 12 12 12 13 18 16 25 30 39 37 40 26 28 14 18 15 32 32 21 17 10 10 15 21 32 39 32 25 22 29 22 28 25 30 19 20 23 23 23 24 30 26 24 14 11 11 16 16 26 23 34 28 28 30 37 37 37 28 28 18 10 8 8 8 13 15 13 9 14 13 19 26 23 20 16 20 10 10 10 12 13 18 21 25 28 25 17 22 22 21 16 14 28 24 19 13 10 10 10 10 12 8 6 8 8 15 10 18 15 19 14 11 12 10 18 15 23 26 30 18 10 10 10 10 13 11 11 16 22 28 19 14 16 13 19 14 16 19 21 10 10 14 10 10 9 10 9 9 9 8 8 8 10 10 10 10 8 8 8 8 8 8 8 8 8 8 10 6 7 8 10 8 8 6 6 10 9 11 11 8 8 8 8 8 8 8 10 10 10 8 8 8 8 9 10 8 8 8 8 8 8 6 7 8 8 8 8 10 11 10 11 11 10 10 11 11 11 11 11 11 10 10 10 10 8 8 10 8 10 10 18 10 10 10 8 8 8 8 8 8 9 9 9 9 10 10 10 10 11 8 8 8 8 8 11 13 7 6 8 8 8 8 8 6 6 8 8 10 10 16 16 19 17 15 15 8 8 8 8 8 10 10 8 8 8 3 0 3 8 8 6 6 8 8 11 8 10 10 10 8 8 12 11 10 10 10 8 8 8 8 9 10 10 10 8 8 8 8 8 8 8 10 12 13 14 14 12 12 10 15 10 10 10 8 6 6 8 8 9 8 11 11 10 10 8 10 10 8 8 8 8 8 8 6 6 8 10 10 10 11 11 13 13 14 18 10 10 7 6 8 8 8 8 6 6 8 8 8 8 6 6 10 8 8 9 13 12 8 9 9 9 14 9 11 9 10 10 9 11 10 10 10 10 10 10 12 11 9 8 8 8 8 8 10 10 12 12 9 7 11 6 6 6 7 10 10 15 11 8 8 8 8 10 11 11 8 10 7 9 9 9 11 9 8 8 8 8 8 8 9 10 9 8 8 8 8 8 6 6 8 8 8 8 8 8 8 10 10 10 10 9 11 9 9 9 9 10 12 16 19 13 10 10 11 8 8 8 10 13 13 8 6 6 8 6 8 8 10 10 8	Open. Hide. 9 9 9 9 10 10 11 13 10 10 13 15 19 8 8 8 8 9 7 8 8 8 9 9 10 10 10 10 10 12 12 10 10 12 10 8 8 8 8 8 8 9 15 10 10 6 6 6 8 10 11 17 16 16 13 26 17 16 12 12 11 8 8 8 8 8 9 21 26 18 16 11 16 22 16 19 11 11 11 9 10 10 12 14 12 12 11 9 8 8 8 7 8 8 8 3 0 3 10 8 11 15 10 8 8 8 8 8 10 10 8 8 8 10 15 10 12 8 8 8 8 10 8 8 8 8 10 6 7 8 10 10 8 8 8 6 6 6 6 8 8 8 8 8 8 8 10 10 6 7 8 8 9 8 9 9 9 9 9 10 10 14 15 9 9 8 8 8 8 8 8 8 6 6 7 7 8 8 11 12 10 10 9 10 10 13 18 19 15 9 9 8 10 8 8 11 8 8 8 11 8 8 10 12 12 8 8 8 8 13 13 10 8 8 8 12 11 8 8 6 7 10 10 8 8 6 6 8 8 11 8 8 8 8 10 8 9 10 10 10 10 11 8 8 8 8 8 8 8 10 15 10 9 9 8 8 8 6 6 8 8 8 8 8 8 7 8 8 13 15 16 13 10 12 11 12 11 11 9 10 9 10 10 21 19 10 8 8 8 8 8 6 6 8 8 8 8 8 8 8 11 11 11 11 8 8 6 6 8 8 11 15 15 12 11 11 15 10 15 15 17 15 15 15 11 11 8 10 6 6 8 8 13 13 15 16 11 11 9 10 9 9 10 10 9 9 10 10 10 8 10 8 8 6 6 6 8 11 8 8 8 8 10 10 18 8 8 8 8 8 8 9 9 9 11 11 8 8 8 8 8 8 11 9 9 10 10 8 8 8 8 8 8 10 9 9 9 9 10 11 11 16 10 10 12 8 8 8 8 10 11 8 8 6 6 8 8 10 8 8 8 8 8 8 8 8 12 10 10 10 8 8 8 8 8 8 6 6 8 8 9 12 8 8 6 6 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 11 11 11 11 8 8 8 10 10 8 11 11 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 11 12 12 11 8 8 8 8 8 8 9 9 10 11 9 9 9 9 9 9 9 11 10 10 8 8 8 6 7 8 7 8 10 10 6 6 8 8 8 6 7 8 10 11 10 8 8 10 12 10 10 10 10 8 8 8 8 8 8 8 10 15 11 13 11 11 11 11 21 10 12 9 10 10 10 9 8 8 6 6 8 8 8 8 8 11 11 8 8 8 8 8 8 10 13 13 10 11 11 10 8 8 8 8 10 10 12 12 12 10 10 10 13 10 10 10 8 10 8 9 10 10 10 10 8 8 8 11 8 8 6 7 8 8 9 9 9 10 11 11 11 12 10 10 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 10 13 10 10 9 8 8 8 8 8 8 10 10 10 12 11 11 11 11 11 16 21 28 28 16 16 10 10 9 10 8 8 8 8 9 9 9 9 8 8 8 8 10 10 10 10 14 13 16 8 8 8 8 8 8 6 6 8 8 8 8 8 8 15 13 11 11 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 6 6 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 12 12 8 8 6 6 8 8 8 8 8 9 8 8 10 12 10 10 8 8 8 8 8 8 8 8 8 8 13 8 8 8 6 6 10 8 12 10 10 10 8 8 8 8 8 8 8 8 8 10 10 8 8 10 10 8 8 8 8 8 7 7 8 8 11 10 8 8 8 6 6 6 6 10 8 9 9 6 8 6 6 8 8 11 11 11 11 13 8 8 8 6 7 10 10 8 10 8 8 8 8 8 8 10 12 13 10 10 10 10 11 8 7 9 9 7 8 8 8 8 8 8 8 9 10 10 10 14 13 10 8 6 6 8 8 12 12 12 12 12 8 8 8 8 9 8 8 8 6 6 8 8 10 11 9 12 18 16 9 8 8 8 10 8 8 9 15 9 7 7 8 8 8 6 6 6 6 8 8 10 10 6 6 8 8 10 9 10 8 8 8 8 8 11 13 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 9 8 10 8 10 10 12 9 10 8 8 8 10 10 9 9 11 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 9 9 10 8 10 9 7 14 8 11 11 10 10 10 11 10 8 8 8 8 8 8 6 6 8 8 11 7 9 12 10 8 8 9 9 10 11 10 8 7 8 8 8 8 8 8 8 6 8 8 8 8 8 8 10 10 8 8 8 9 9 9 8 8 8 13 8 8 8 10 8 8 9 7 8 8 8 8 8 10 10 20 10 8 8 8 8 8 10 13 13 14 11 10 10 15 11 8 8 8 8 8 8 9 9 8 11 7 9 11 6 7 8 10 10 10 8 8 9 10 10 10 11 13 11 8 8 8 10 8 8 8 10 13 9 10 8 10 8 8 10 10 9 9 9 8 10 10 10 8 8 9 9 11 12 15 14 10 10 10 10 10 10 9 9 9 6 6 6 8 8 8 6 7 8 6 6 8 10 13 8 8 10 8 8 8 6 6 10 8 8 8 8 8 8 6 6 8 8 9 9 9 9 8 8 8 6 6 8 10 10 9 9 9 10 10 17 16 15 10 11 11 11 11 10 10 10 9 6 6 10 8 8 8 9 8 8 10 10 8 8 8 8 10 9 9 10 8 6 6 6 8 11 12 10 8 8 8 8 8 8 6 6 12 7 7 8 8 11 11 8 10 6 6 8 8 8 8 8 8 10 11 10 16 8 8 6 6 6 6 6 6 6 6 10 8 8 8 8 8 8 11 11 10 8 6 6 8 6 6 8 8 9 9 10 10 11 11 9 10 8 10 8 8 8 8 10 15 11 11 10 13 10 8 8 10 12 8 10 8 8 8 9 8 8 8 6 8 6 6 8 8 6 7 6 8 8 13 16 10 6 8 8 8 10 6 10 8 8 8 8 8 11 18 10 8 8 8 8 10 10 7 6 8 8 6 6 8 8 10 8 8 10 13 12 8 6 8 6 7 13 8 8 8 8 8 10 8 8 6 8 8 8 8 8 8 8 8 8 6 6 8 8 11 8 8 6 6 8 8 11 11 10 10 13 11 10 12 12 8 8 8 8 6 6 8 8 6 7 8 9 9 10 10 10 10 10 10 6 6 6 8 6 6 6 6 6 6 8 9 9 15 10 8 8 8 7 8 8 10 8 6 7 6 8 8 9 14 13 10 10 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 10 10 10 11 8 10 10 11 11 10 6 8 10 8 8 8 8 8 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no134_o12.b1 MSMg01no134_o12.b1 CHROMAT_FILE:
MSMg01no134_o12.b1 PHD_FILE: MSMg01no134_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:48 2005
         (703 letters)



>mm_chr10_93741194_93742296
          Length = 1103

 Score = 1118 bits (578), Expect = 0.0
 Identities = 620/644 (96%), Gaps = 20/644 (3%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcc-catggaacctgtgcct-t--taaaacattatttgctgtttatctgaaaatac 71
           ||||||| |||||||||||||  | |  ||||||||||||||||||||||||||||||||
Sbjct: 628 gaattccacatggaacctgtg--tatactaaaacattatttgctgtttatctgaaaatac 571

                                                                       
Query: 72  agattcaactaggtgtcctgcgcctttattggctaaatatggcaggtctgtttcctgagg 131
           ||||| |||||||||||||| |  ||||||||||||||||||||||||||||||||||||
Sbjct: 570 agatttaactaggtgtcctgtgtttttattggctaaatatggcaggtctgtttcctgagg 511

                                                                       
Query: 132 aacatggttttttgttctccttggagactgccttccttctctgtgcctatcagctcaatg 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aacatggttttttgttctccttggagactgccttccttctctgtgcctatcagctcaatg 451

                                                                       
Query: 192 atttgaggagtcagaaaccagaaaattaatcccagcccacccctttgtgccaaacaccca 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atttgaggagtcagaaaccagaaaattaatcccagcccacccctttgtgccaaacaccca 391

                                                                       
Query: 252 cagggccatgttatttattccagtgcacaggagcacacatatcctgtgtgtgtgcatcca 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cagggccatgttatttattccagtgcacaggagcacacatatcctgtgtgtgtgcatcca 331

                                                                       
Query: 312 caccccaccttcaaccacacacacacacacacacacacacacacacacacatattttcac 371
           |||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct: 330 caccccaccttcaaccacacacacacacacacacacacacacacaca------------- 284

                                                                       
Query: 372 aaacacacacatgctcgaatgcttttaaaggatgaagggatttttagcatcccaaaacac 431
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 -aacacacacatgctcgaatgcttttaaaggatgaagggatttttagcatcccaaaacac 225

                                                                       
Query: 432 aacccttcattctgttctgactttcatggctttcccaaaccgtattttttcccttctggt 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 aacccttcattctgttctgactttcatggctttcccaaaccgtattttttcccttctggt 165

                                                                       
Query: 492 tagttcctggctcctctagaaaaaacctataactgcagcacggctcatattttgagtgca 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tagttcctggctcctctagaaaaaacctataactgcagcacggctcatattttgagtgca 105

                                                                       
Query: 552 tgaccaggcttccactacagaaggctgccgatgagcctttatcagttgtcttccaggaca 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tgaccaggcttccactacagaaggctgccgatgagcctttatcagttgtcttccaggaca 45

                                                       
Query: 612 tttgaatttttcattatttgccactcactgggcaaaactgccca 655
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  tttgaatttttcattatttgccactcactgggcaaaactgccca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information