BAC Information

Click to search

BAC

Clone NameMSMg01-135I12
Chromosome10 (Build37)
Map Location 122,710,681 - 122,711,097
singlet/doubletsinglet
Overlap geneAI851790
Upstream geneAvpr1a, Ppm1h, D630033A02Rik, Mon2, Usp15, LOC100042958
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135I12.T7 (MSMg01no135_i12.b1)MSMg01-135I12.TJ (MSMg01no135_i12.g1)
ACCAG341966AG341967
length790715
length of high quality
(start - end)
97 (71 - 167)413 (76 - 488)
definitionCHROMAT_FILE: MSMg01no135_i12.b1 PHD_FILE: MSMg01no135_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:41 2005CHROMAT_FILE: MSMg01no135_i12.g1 PHD_FILE: MSMg01no135_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATATTTGCGGCGCTATACGACTCCTANGTACGAAGGGGGCGGAATTCGC
CCTATTACCAAAAAAAATATACATTTTTTTTTCTCCTGAATACCAGGAAA
ACCCAAATTCAAAACCCTTCTCTAGCCCTCATATAATATGATAATGTACT
GTCCAACTTTTCTTAAAACTCTTACCTGATAACAGGCTGGTAGTTTTAGT
ATCTTAAAGCTGCTATCATTTGCACATAACTTATCACAAGTATCTTGTTG
CTTAGAAGTGTATAAATTAAACGTTTCATGAGGACTCCTGTAATCTGATA
CTGTAATATTTTTTTTTCTGACAGGCAATCCACAGTTACCGAGTTTCCCG
ATCGAAATTGACTGACCCCGCCCACAAGTTGAAAATTAACCTCACCATAA
CATAAGCCTAGATTCATACTATGAATTACTCCTTGTTTACCACATTTTTT
TTTAACTACTTCCTTCGTATTATACCATATTTAATGTTCTCACTTTCCAT
ATATCATAACATCTTCTGTCTATTTTCCTACTGTATCTCTGCTGTTTAAC
CTTATTAACATGCCTGTATAATTTTCCACAATTTCCTCCTTATAAATATA
TCTTATTGGTCTAATCTTTCCAATAACAACCTTGATAAATCCTTATATAT
TTATTTCTTTATTCTCTGCTCTCTTTCTTTTCATCCTCTTCCCCCCCAAT
CTCCAGTCTGCTCTACTCTAATTTTCCACTCCCACTCTTTTTTCCACTTT
CCTACCCTCCCCATCTATTATATATTTTATCCCACTCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTCTTAGTAGATGCATCTATAGG
CTTTCTGTGTGTGAAGGGTCATGAGTGTGCCTTCAAGGTATATGGACATG
ACATGTTAGGGACATGTGTCCCGACTCTTCTGTCATCTCCACCCATGACT
CTCAGCTCTACGTGTAGACTCTGGTTGGCAGTGACAGGACCAGCGGGAGG
GACAGAATGAGAAGATGAGCGACTCCATGTGGTTCCAGTATTTAGTTTTA
TTTCTTCATATATTTGACGATGAACTCACTCTGAAGTTGGTGGCCTGCTG
ACAGGGCAAGACAGCGCAGATGGTCTTCCATCTTGTAGTCTTGCTGAGGC
CATTTCTGGTTTAACTTGAATTTAATCTCCTCACCGAAGAACTCCATGGA
AAACTACCCAACTCTCTTCTAGGAACCCAACGTCAACATGCCATGGTTAA
CTTACAACTTAGCTTCTGGTTAACTAATTGCTGGTTCAGAACATGGGAGT
TTGGGGGTGGGGNNNNNNNNNNNNNNNTNNTTNNTTTTTTTTTTGTTTCT
TNGTTTTNTTGCGTGGTTTTTTGTTTTTTTTTTCTCTTTGTTTTTTTTTC
CTTTTTTCTTTCGTCTCCTCTCTCTTCTCTCCCTTCCTCCCTCTGTCTCC
TCCCTTTCCGCGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_i12.g1 MSMg01no135_i12.g1 CHROMAT_FILE:
MSMg01no135_i12.g1 PHD_FILE: MSMg01no135_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:41 2005
         (413 letters)



>mm_chr10_122710485_122711297
          Length = 813

 Score =  756 bits (391), Expect = 0.0
 Identities = 409/417 (98%), Gaps = 4/417 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcttagt----agatgcatctataggctttctgtgtgtgaagggtcatgagtgtgcc 56
           ||||||||||    ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 197 acttcttagtcaagagatgcatctataggctgtctgtgtgtgaagggtcatgagtgtgcc 256

                                                                       
Query: 57  ttcaaggtatatggacatgacatgttagggacatgtgtcccgactcttctgtcatctcca 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttcaaggtatatggacatgacatgttagggacatgtgtcccgactcttctgtcatctcca 316

                                                                       
Query: 117 cccatgactctcagctctacgtgtagactctggttggcagtgacaggaccagcgggaggg 176
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gccatgactctcagctctacgtgtagactctggttggcagtgacaggaccagcgggaggg 376

                                                                       
Query: 177 acagaatgagaagatgagcgactccatgtggttccagtatttagttttatttcttcatat 236
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acagaatgagaagatgagcggctccatgtggttccagtatttagttttatttcttcatat 436

                                                                       
Query: 237 atttgacgatgaactcactctgaagttggtggcctgctgacagggcaagacagcgcagat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atttgacgatgaactcactctgaagttggtggcctgctgacagggcaagacagcgcagat 496

                                                                       
Query: 297 ggtcttccatcttgtagtcttgctgaggccatttctggtttaacttgaatttaatctcct 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggtcttccatcttgtagtcttgctgaggccatttctggtttaacttgaatttaatctcct 556

                                                                    
Query: 357 caccgaagaactccatggaaaactacccaactctcttctaggaacccaacgtcaaca 413
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caccaaagaactccatggaaaactacccaactctcttctaggaacccaacgtcaaca 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)