Query= MSMg01no136_a21.b1 MSMg01no136_a21.b1 CHROMAT_FILE:
MSMg01no136_a21.b1 PHD_FILE: MSMg01no136_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:19 2005
(647 letters)
>mm_chr10_41199949_41200995
Length = 1047
Score = 1185 bits (613), Expect = 0.0
Identities = 634/641 (98%)
Strand = Plus / Minus
Query: 6 gaattctagcagcctgactctcatattcaaattccctcctcaattctcaccctacttcgg 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gaattctagcagcctgattctcatattcaaattccctcctcaattctcaccctacttcgg 787
Query: 66 aggatctcaagccctgctctgccaggaagcccaatgtcattgctgtcatagattttgtcc 125
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 786 aggatctcaagccctgctcttccaggaagcccaatgtcattgctgtcatagattttgtcc 727
Query: 126 tgatctcatcaaagcctccatttgttcagcatttacaaacaacacacaacttataaggta 185
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 726 tgatctcatcaaagcctccgtttgttcagcatttacaaacaacacacaacttataacgta 667
Query: 186 cttataagctctcagcatagtacttagtatagtactaagtgtacaagtacatagtactca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cttataagctctcagcatagtacttagtatagtactaagtgtacaagtacatagtactca 607
Query: 246 gcatagtacttagtacacataagaaaggcatgcagctatttcatccattcagtgagtcca 305
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 606 gcatagtacttagtacacgtaagaaaggcatgcatctatttcatccattcagtgagtcca 547
Query: 306 tagtaggttcgtaactactcatcaggtaccaggctaagccctgggaactaacagccagca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tagtaggttcgtaactactcatcaggtaccaggctaagccctgggaactaacagccagca 487
Query: 366 agaggaaaagagataaacactctctcagtcctggagttagagtagtaccaggtctgtaaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agaggaaaagagataaacactctctcagtcctggagttagagtagtaccaggtctgtaaa 427
Query: 426 tttagcccagacgaggattcctactgccacctacattcagggagcaagagcttgtcacat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 426 tttagcccagacgaggattcctactgccacctacattcagggagcaagagcttgttacat 367
Query: 486 ggagctactgcctgctggaggccggagaggatggggtccgtccataactggggtagactg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggagctactgcctgctggaggccggagaggatggggtccgtccataactggggtagactg 307
Query: 546 tgcccagcccggcctccttcctctcttccttcctccctcctccctcctgggcacagggcc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgcccagcccggcctccttcctctcttccttcctccctcctccctcctgggcacagggcc 247
Query: 606 tacctggcgcagcacccccagcctcagcaggcactgcttct 646
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tacctggcgcagcacccccagcctcagcaggcactgcttct 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_a21.g1 MSMg01no136_a21.g1 CHROMAT_FILE:
MSMg01no136_a21.g1 PHD_FILE: MSMg01no136_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:19 2005
(615 letters)
>mm_chr10_41020035_41021050
Length = 1016
Score = 1139 bits (589), Expect = 0.0
Identities = 610/617 (98%), Gaps = 2/617 (0%)
Strand = Plus / Plus
Query: 1 ttttgctacgttagggg-aaaaaatgtatgcttgctgtctcttaagaattagagtaaatg 59
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttttgctacattaggggaaaaaaatgtatgcttgctgtctcttaagaattagagtaaatg 259
Query: 60 actggattgctatgtaaaataagactggactttgtgttctacaggagatgagctatccag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 actggattgctatgtaaaataagactggactttgtgttctacaggagatgagctatccag 319
Query: 120 agaatttaggataaaaagaactgcttggagaacagataaatatatagacacacatacaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaatttaggataaaaagaactgcttggagaacagataaatatatagacacacatacaga 379
Query: 180 gagagacagagtgaaagacggatggagacacacacacacaaacaagaagagcatggacag 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 380 gagagacagagtgaaagacggatggagacacacacacacaagcaagaagagcatggacag 439
Query: 240 agaggtctcttagaatatagacaaagagatctccagggagaaagcggaacacagcagcct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaggtctcttagaatatagacaaagagatctccagggagaaagcggaacacagcagcct 499
Query: 300 ggaaaactggatcaagtagaacacaacttggatccacaatctgactttctcttgtccttc 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggaaaactggatcaagcagaacacaacttggatccacaatctgactttctcttgtccttc 559
Query: 360 ttttcactgcttccagacaccccttctctcagaacccctctccaggctgaggctggtcct 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 ttttcactgcttccagacaccccttctctcagaacccgtctccaggctgaggctggtcct 619
Query: 420 tggcatctaagcctccaggtgactacaccacaggtgacatttcaactgtaacttctgaga 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 tggcatctaagcctccaggtgactgcaccacaggtgacatttcaactgtaacttctgaga 679
Query: 480 ccttcaggcagatccgatcagactctcagtctactgaaattactatctagatccactaac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccttcaggcagatccgatcagactctcagtctactgaaattactatctagatccactaac 739
Query: 540 ctggggggtaacttgt-gcaataggtaagtcacgtaagacctgcattagttgtcctggca 598
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctggggggtaacttgttgcaataggtaagtcacgtaagacctgcattagttgtcctggca 799
Query: 599 agttttatatcaacttg 615
|||||||||||||||||
Sbjct: 800 agttttatatcaacttg 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
