BAC Information

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BAC

Clone NameMSMg01-136C05
Chromosome10 (Build37)
Map Location 87,739,010 - 87,870,201
singlet/doubletdoublet
Overlap gene1200002N14Rik, Gnptab
Upstream geneAscl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000
Downstream geneSycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136C05.T7 (MSMg01no136_c05.b1)MSMg01-136C05.TJ (MSMg01no136_c05.g1)
ACCAG342421AG342422
length696690
length of high quality
(start - end)		374 (56 - 429)425 (83 - 507)
definitionCHROMAT_FILE: MSMg01no136_c05.b1 PHD_FILE: MSMg01no136_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:25 2005CHROMAT_FILE: MSMg01no136_c05.g1 PHD_FILE: MSMg01no136_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,739,010 - 87,739,374)(87,869,777 - 87,870,201)
sequence
ATCCCCNNTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCTACCTGACCCATGTCCACAGCACGGTTTGGTTA
TGGAAACTAGGCTTCAATAAAGCCCTTTCCAGTGGCATCCTGAAATAGTA
ACTCCTTGGCAAGACAAGAGTTAGTGGGGAAAGCATTGGACCAGAAATCC
AGGAGATCAAGGTTAAGTTTTAATTCAACCATTTCCTTAGAAGGGCTGAT
TTTCAACCATTAAACAAGTCACTTCACCCCCTTGCGTCTGTTGCCTTCGT
TGTAACACAAATAATTTGGATTGGGAGGTACCCCTGGGTCTTCTGCCATT
TGGAAAACAAAACAGGTCTCTGTCCCTGAGCATCTGGGATTTATCCTTCA
TGTATAACACACTTGTTTTATACACCACACACTCCATACACACACATACA
CACACACACACACACTCATATTCACATACTCTCACACCCTCCAATGTGTG
TGTGAGCCAGTGCCTGCTCTGGGTTTTTACCTAATATAGCAGTATTTCTT
CAAGAGCATTGCACACCTCTCTTCTTTTAGCCTTTTTCGGCGACGATTTA
CTGTCGTGTTGAATATCTGTACCTGGAATCCTTATTAGGCTGTTTTCCGA
CACGGTCTTATAAGGAACGCCTCGATTCCGAATGTTCAGCCACCTG

TTCTTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCACAATATGCATCTT
CTGCAGCACTTTATGCTCGGAGGGATTCTTAGTATACTTAATACCTCCAC
CTCCACCTCCACCATGGGCACGTGTATCTTCCATGAGATAGCCAGCACCT
GGGGCAGAAGTGGAACTAGGCATCTGCAGCCTGCCTTCCTAGTCACTTAT
TTTCTCTCCTGCACTTCCAGGGTTTCTCTCCCCACTGCAACCATATTCAG
AAACATCCCCTAGGTGTTTCCTGCACACTCCTTGGTGGGCCTCACACAGT
AGCCGGCGGCACACAGATTACTTAGAAACAGGCTGCTGCTCTCTGTCAGC
TTCTAACTGCAGGGGGTCCAAGGCGCCCTCAGAATGAGTGCTCTTTTGGA
AGAAGTTCCGGGCTAATGCTGCTGCTGCCACCGATCTCGGTGGCCGCACT
TTGAGATCAGCTGACCCTCTATGTAGCTGTGTTCCAACTCCCCCCACTGC
ACCTCCTGTCCTCTATGTAAGAGTAACGGATTCCTCTCAGTCACCATTAT
TTGCCTGAAGTCTGGAATATTGCCTCATGACTGGGTTAATATGTACCACT
CAGATAAATAACGATAATCTCGGTATAATTTTATCATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_c05.b1 MSMg01no136_c05.b1 CHROMAT_FILE:
MSMg01no136_c05.b1 PHD_FILE: MSMg01no136_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:25 2005
         (374 letters)



>mm_chr10_87738807_87739580
          Length = 774

 Score =  659 bits (341), Expect = 0.0
 Identities = 359/365 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctacctgacccatgtccacagcacggtttggttatggaaactaggcttcaat 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 ggaattctctacctgacccatgtccacagcacggtttggttatggaaactaggcctcaat 263

                                                                       
Query: 64  aaagccctttccagtggcatcctgaaatagtaactccttggcaagacaagagttagtggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 aaagccctttccagtggcatcctgaaatagtaactccttggcaagacaagagttactggg 323

                                                                       
Query: 124 gaaagcattggaccagaaatccaggagatcaaggttaagttttaattcaaccatttcctt 183
           ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 gaaagcactggaccagaaatccaggagatcaaggttaagtcttaattcaaccatttcctt 383

                                                                       
Query: 184 agaagggctgattttcaaccattaaacaagtcacttcacccccttgcgtctgttgccttc 243
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaagggttgattttcaaccattaaacaagtcacttcacccccttgcgtctgttgccttc 443

                                                                       
Query: 244 gttgtaacacaaataatttggattgggaggtacccctgggtcttctgccatttggaaaac 303
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttgtaacacaaatagtttggattgggaggtacccctgggtcttctgccatttggaaaac 503

                                                                       
Query: 304 aaaacaggtctctgtccctgagcatctgggatttatccttcatgtataacacacttgttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaacaggtctctgtccctgagcatctgggatttatccttcatgtataacacacttgttt 563

                
Query: 364 tatac 368
           |||||
Sbjct: 564 tatac 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no136_c05.g1 MSMg01no136_c05.g1 CHROMAT_FILE:
MSMg01no136_c05.g1 PHD_FILE: MSMg01no136_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:25 2005
         (425 letters)



>mm_chr10_87869713_87870537
          Length = 825

 Score =  791 bits (409), Expect = 0.0
 Identities = 421/425 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcacaatatgcatcttctgcagcactttatgctcggagggattcttagtatacttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 actcacaatatgcatcttctgcagcactttatgctcggagggattcttagtatacttaat 430

                                                                       
Query: 61  acctccacctccacctccaccatgggcacgtgtatcttccatgagatagccagcacctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acctccacctccacctccaccatgggcacgtgtatcttccatgagatagccagcacctgg 370

                                                                       
Query: 121 ggcagaagtggaactaggcatctgcagcctgccttcctagtcacttattttctctcctgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 369 ggcagaagtggaactaggcatctgcagcctgccttcctagtcacttattttctctcctac 310

                                                                       
Query: 181 acttccagggtttctctccccactgcaaccatattcagaaacatcccctaggtgtttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acttccagggtttctctccccactgcaaccatattcagaaacatcccctaggtgtttcct 250

                                                                       
Query: 241 gcacactccttggtgggcctcacacagtagccggcggcacacagattacttagaaacagg 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 249 gcacactccttggtgggcctcacacagtagccggtggcacacagattacttagaaacagg 190

                                                                       
Query: 301 ctgctgctctctgtcagcttctaactgcagggggtccaaggcgccctcagaatgagtgct 360
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 189 ctgctgctctctgtcagcttctaactgcagggggtccaaggtggcctcagaatgagtgct 130

                                                                       
Query: 361 cttttggaagaagttccgggctaatgctgctgctgccaccgatctcggtggccgcacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 cttttggaagaagttccgggctaatgctgctgctgccaccgatctcggtggccgcacttt 70

                
Query: 421 gagat 425
           |||||
Sbjct: 69  gagat 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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