BAC Information

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BAC

Clone NameMSMg01-136J14
Chromosome10 (Build37)
Map Location 30,173,344 - 30,173,850
singlet/doubletsinglet
Overlap genenone
Upstream geneRspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
Downstream geneTrmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136J14.T7 (MSMg01no136_j14.b1)MSMg01-136J14.TJ (MSMg01no136_j14.g1)
ACCAG342757AG342758
length717715
length of high quality
(start - end)
668 (50 - 717)507 (79 - 585)
definitionCHROMAT_FILE: MSMg01no136_j14.b1 PHD_FILE: MSMg01no136_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:02 2005CHROMAT_FILE: MSMg01no136_j14.g1 PHD_FILE: MSMg01no136_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAT
CCGCGGAATTCCAGTTTTATCTTTGATACCAAATTCCTTACAAAATGAAG
TAAAATTGTTGCCAGTATAGGATGGCCCATTATCTGTCTTAATGAGGTTA
GGCAATCCCATAGCATTAAAGGCTTGTAAACAATGATCAATTACATTTCT
AGAGGCCTCTCCCATATGTAGAGAAGCAAAAAGAAATCCTGAACAAGTGT
CAATACAAACATGTATATATTTTAATTTTCCAACTTCTGCATAATGAGTT
ACATCCATTTGCCAAATATGATTAGGCATAAGGCCTCGTGGATTAACTCC
TAAATGTGACACTGGAGATACTGTAATATATTTAGGACATTGTTTTACAA
TCATTCTTGCCTGTTTTTTACCGATCTTGTGTTGGAGCCTTAAGGTATGG
CTAGAGAGATGAAATTTATCATGATCACATCTAGCTAAAGCAACAGGATC
TGAAATTAAGGCCTCTCCTATTAGATCTCTGTCAATGCAATCATTGCCTG
CAGCTAAAGGTCCAGGAAGACCAGAATGAGCTTGTATATGACCAATATAA
AATGGATGTTTTGGGGCAAGAATGATGTTTTGCAATTGTGAAAACAGATC
CTGCTGGGGTATTAAAGTTAAACGTACCACAAGTCTCCAATAAGGGAATT
GATTTTGCAACACATAA
NNNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAAAGTGTGAGCTCTACCA
GTCTTGGAGATAAATGACATAATCCACATCTGTGAAGATGTCCAAGTCAA
CTTCATTGTGTCCTGGACCTCTAAAGTTTTGAGGCTTCTCTGCGTGGAAA
GGAAGCTTATATTTTAACCTGCCCCATGAACTGTTGATTATTTCTGAAAC
ATTTCTCACATTGCTTATTTAATGAGGGGTAGAAAGAGGGAGGTATTTTC
TTGGAAAGTTATTATGTTATTTCCTTACAAGTCAAAATGTCATTTTGAAG
TTTTGTGGGTTATCTCTACATCTGGTCCATCATAAATCTGAGTGATCCGT
ATAAAATTAAAGCATAGAACCCATATTTTATCTAAGTGTATTAACTCTAT
TACACTGCTTAGTTAAACCGCAGATACAAGAGAGGCATAAATAAGAATAG
TTGGCTCTTTCTGTGGATGTCAAGATTTCTTTCTCATTTTATATTCTCTA
TTCTCAATGTATATGGAATTCTAAAATAAATGGAGATTAAGATACACAAG
TCATTGCAATTAAGTATGTGGGACCAGGAGTTTAGAGACCAGTAAATACT
AAGGAATTGAAACTGTTTTCTTCCTATTATATTTGAGTTTTTGACTCAAC
CTCTAACAAAGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_j14.g1 MSMg01no136_j14.g1 CHROMAT_FILE:
MSMg01no136_j14.g1 PHD_FILE: MSMg01no136_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:02 2005
         (507 letters)



>mm_chr10_30173144_30174050
          Length = 907

 Score =  936 bits (484), Expect = 0.0
 Identities = 502/508 (98%), Gaps = 2/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaaaagtgtgagctctaccagtcttggagataaatgacataatccacatctgtgaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 agaaaaagtgtgagctctaccagtcttggagataaatgacataatccacatctgtgaaga 648

                                                                       
Query: 61  tgtccaagtcaacttcattgtgtcctggacctctaaagttttgaggcttctctgcgtgga 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 647 tgtccaagtcaacttcattgtgtcctggacctctaaagtttttaggcttctctgcgtgga 588

                                                                       
Query: 121 aaggaagcttatattttaacctgccccatgaactgttgattatttctgaaacatttctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aaggaagcttatattttaacctgccccatgaactgttgattatttctgaaacatttctca 528

                                                                       
Query: 181 cattgcttatttaatgaggggtagaaagagggaggtattttcttggaaagttattatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cattgcttatttaatgaggggtagaaagagggaggtattttcttggaaagttattatgtt 468

                                                                       
Query: 241 atttccttacaagtcaaaatgtcattttgaagttttgtgggttatctctacatctggtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atttccttacaagtcaaaatgtcattttgaagttttgtgggttatctctacatctggtcc 408

                                                                       
Query: 301 atcataaatctgagtgatccgtataaaattaaagcat-agaacccatattttatctaagt 359
           ||||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||
Sbjct: 407 atcataaatctgagtgatccgtataaaattaaagcatga-aattcatattttatctaagt 349

                                                                       
Query: 360 gtattaactctattacactgcttagttaaaccgcagatacaagagaggcataaataagaa 419
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 348 gtattaactctattacactgcttagttaaaccgcagatacaagagaggcagaaataagaa 289

                                                                       
Query: 420 tagttggctctttctgtggatgtcaagatttctttctcattttatattctctattctcaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tagttggctctttctgtggatgtcaagatttctttctcattttatattctctattctcaa 229

                                       
Query: 480 tgtatatggaattctaaaataaatggag 507
           ||||||||||||||||||||||||||||
Sbjct: 228 tgtatatggaattctaaaataaatggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)