BAC Information

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BAC

Clone NameMSMg01-137M15
Chromosome10 (Build37)
Map Location 128,314,583 - 128,314,912
singlet/doubletsinglet
Overlap gene1110005A23Rik
Upstream geneRdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2
Downstream geneGdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137M15.T7 (MSMg01no137_m15.b1)MSMg01-137M15.TJ (MSMg01no137_m15.g1)
ACCAG343624AG343625
length705705
length of high quality
(start - end)		452 (72 - 523)330 (70 - 399)
definitionCHROMAT_FILE: MSMg01no137_m15.b1 PHD_FILE: MSMg01no137_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:37 2005CHROMAT_FILE: MSMg01no137_m15.g1 PHD_FILE: MSMg01no137_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:37 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCG
GAATTCCACCATCCCGGAAAATGAATTTTTAACTAAGTTCTGGGCCTAGC
CTTTAATGGCTGAGCCATCTCTCCAGTCCTCAAGAATTTTTTAAATAAAT
TATTCATCAGAGGAAATTAATATCTAGGATAGGTAAGTAAGTACAAAAAT
CAAATACCAAAAAAATACAATCAATAAATAAACTAATGAACTAGACAGTT
CTCAAAAGAAGAAATACAAATAGCCAAGAGGTGCTTGAAATACATTCAGC
ACCCTCAGCCATCAAGGATTTCCGAACTGAAACTGCTTTGAAATTCTATC
TCACCTGGATCAGAATGTATCAAGAAAGCAAACGATGACAAATTCTGCCC
AAGTTGTCAGGACGAAGAATTTTACTCTCTACAGGTGAGAATGTGAGCTG
ATGTGGCCACTATGCATCAGCATGGGGAACTGTGTGAGTTACTTCTCTGA
CTGGCAAAAGACAGTGTGAAGAAGGGAAGGTCCATGTCAGCTTACAGTCC
CAGACAACAGTCTGCCACGGCAGGGGTCACAGTGACTGGAATATACCATA
GCTGACCACCGACCCTCAATAGGGAGGTAGGAGAGGTAAATGGTGATGCT
TAGCTCCCTTTCTGCTTTTTTTTTAAGTCTATTTTTATTTTTTTTAATAA
TTTAC

CCCCCGATGTAGTGCGAGGCCTGGAGGCCGCCTGTTCAAAAATGGGGGTG
ACCTATAGAATTTCCGCGGAATTCAGTAGCAGTTTTATTTAACTGCTCTT
CTGCGTTTAAGATTGTTGTGGTTTTTGTTTTTAATTATTTTTGCTTATTA
ATAAAAAAGGAAGAAAAGAAAATGTGTTTTATTAGGTGTTCCTTTTAAGT
TTCTAGAGCCTGATTAGACCACATAGAGGGAGTGTCAATGGCAAATATTA
AGGGGACTAACTGTAATGCCTATATCATGTAGAAAAAGAAGATAAAGAAG
AGGATTGCGCCTTTAATCCCTTCACTCTGGAGGTAGAGGCAGGCGGATTT
CTGAGTTCAAGGCCAGCCTGGTCTACAAAGTTAGTGCCAGGACAGCCAGG
GCTACACAGAGAAACCCTGTCTTGAAAAACCACTTTTATAACAAAAAATA
ATCACAGAGGAGGATTGGGTCTACCATCTAATCCTATTTATTATCTTCTT
CATACTCACAGATATGCTTTTATTTTTTCCTTCTTAAATGAGGTCTTGTC
ACCACAAGTCTTTGATTGGGTTGAAACAGCCCATTTTGAAGGAAAAAAGA
CTTGGGAATTTTTGGAAATGGAAAGGCTAACATTGTGGGGCTAATGACTG
AATGCCTTCTACTTTGATTGATGCCTTACTTCTTAACGCTGAAACTGGCC
CCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_m15.g1 MSMg01no137_m15.g1 CHROMAT_FILE:
MSMg01no137_m15.g1 PHD_FILE: MSMg01no137_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:37 2005
         (330 letters)



>mm_chr10_128314383_128315112
          Length = 730

 Score =  592 bits (306), Expect = e-173
 Identities = 324/330 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcagtagcagttttatttaactgctcttctgcgtttaagattgttgtggtttttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcagtagcagttttatttaactgctcttctgcgtttaagattgttgtggtttttgtt 260

                                                                       
Query: 61  tttaattatttttgcttattaataaaaaaggaagaaaagaaaatgtgttttattaggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaattatttttgcttattaataaaaaaggaagaaaagaaaatgtgttttattaggtgt 320

                                                                       
Query: 121 tccttttaagtttctagagcctgattagaccacatagagggagtgtcaatggcaaatatt 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttttaagtttctagagactgattagaccacatagagggagtgtcaatggcaaatatt 380

                                                                       
Query: 181 aaggggactaactgtaatgcctatatcatgtagaaaaagaagataaagaagaggattgcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggggactaactgtaatgcctatatcatgtagaaaaagaagataaagaagaggattgcg 440

                                                                       
Query: 241 cctttaatcccttcactctggaggtagaggcaggcggatttctgagttcaaggccagcct 300
           |||||||||||  ||||| ||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 441 cctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcct 500

                                         
Query: 301 ggtctacaaagttagtgccaggacagccag 330
           ||||||||||||||||||||||||||||||
Sbjct: 501 ggtctacaaagttagtgccaggacagccag 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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