BAC Information

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BAC

Clone NameMSMg01-139L20
Chromosome10 (Build37)
Map Location 109,689,862 - 109,757,598
singlet/doubletdoublet
Overlap geneLOC100042506
Upstream geneNav3, LOC100042497, LOC100042502
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139L20.T7 (MSMg01no139_l20.b1)MSMg01-139L20.TJ (MSMg01no139_l20.g1)
ACCAG345062AG345063
length768725
length of high quality
(start - end)		215 (43 - 257)652 (71 - 722)
definitionCHROMAT_FILE: MSMg01no139_l20.b1 PHD_FILE: MSMg01no139_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:14 2005CHROMAT_FILE: MSMg01no139_l20.g1 PHD_FILE: MSMg01no139_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,757,387 - 109,757,598)(109,689,862 - 109,690,513)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTATGTTGACCCACCAGGCCCACCCACCCCCTCTCTTTGTATAGTTT
GTATTCAATCTTTCAGTCTACTTTCATTTATTTCATAAAATTGACTTGGC
AGTCCTCAGGCTACATTGTGAATAAAAGTAAGGGAGGGAGGCCAGAGAGA
AGGGAGAGAAAGAGGGGTAAAAGAAGGGAGGAAGAGATAGAGGCAGGGAG
GGAGGGGGATTTNTTTTTTTNTTTTCTTTTTTTTTTTTTTNTTTTTNNTN
TTTNTTTTTTTNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTCCCTCTCCTCTTCTTTCTTTTTCTTTCTTTTT
TTCTCTTTTTTTTTTTTCTTTGCCCCCCCCCTCTTTTTTATTTCTCTCGC
TGTTTTTTTCTCTTTTTTTCCCCCCCCTCTTTTTTGCCTTCTCTCTTTTT
TTTTTTCCCCCTCTGTCCTCCTTCCCCCTGCCCCTATTTTCCCCCTTTTA
TTTCTCATTTATTTATTTTTTTTTGTTATCAATCTCATTTCCCTCCCTAT
GTTTCTTACCTTTTCCTACCCTCTTTTGCCCATCTCCCCGCGCCCGTTTA
TATCACTTAATTTGTTCCTTCTTTTTCTTTTTCTCTTCCCCCCCCCCCGC
CGTATAATTCCTCATTTCGTCAATTTCCTGCCCCCCCTTTATATTCTCCT
CCTCTCATTTTTTTCTCT

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCCTCACATTTGTGCTTTGTCGTATCCAT
TCTGGGGATAAATAGAGGTAAATAAAACTATACGCTCTAGAGAAAAGCAT
GAATCATGTTATTAGCTAAACTGCTATCAAATTTTCCTACCAACCCAAGT
TTGCTGGATTTATTCGGCATTGACTCTGAAGGCACGCTCTTAAATTCATA
CGATTGTGACTGTTGTCTAGTCTTTTGGTCCCTCTGTTTCGGTCTGTCAA
GATTCATAAAAACTTCCAAGTGTAGAAGAAACAGAATACCTTTCAAAAAG
CTTATGACATTCAAACTTAGACATACATATGAAAATCATCAATTTGAATG
AATCAGAGGAACTATTTAATGAATACCATTGAAGGTTAATTATGATTCAA
CAACTGCCCAACACAATATATATGCAAATACTCCGAGTGTGTGATGGATT
GACCTTAGAAAGAGTTTAGAAAACAAATTCCTCTCTAGTCCACTCAACAT
TTCCCCACTGGGAAACTACATCTTATGACTATTTTCTTGAATACTTTCTG
AGCAAGCTAAAGATGTTTGAATAGTAACATCCTTATAAGAGTTTAAGGAT
GGATGAAGAATAAACATAAATTCAAAGTTAGAGATAGTAAATGTCTCTAT
TTTAAAGGCTTTTTACTCAACCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_l20.b1 MSMg01no139_l20.b1 CHROMAT_FILE:
MSMg01no139_l20.b1 PHD_FILE: MSMg01no139_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:14 2005
         (215 letters)



>mm_chr10_109757261_109757875
          Length = 615

 Score =  379 bits (196), Expect = e-110
 Identities = 208/212 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattatgttgacccaccaggcccacccaccccctctctttgtatagtttgtatt 63
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggaattcatcatgttgacccaacaggcccacccaccccctctctttgtatagtttgtatt 279

                                                                       
Query: 64  caatctttcagtctactttcatttatttcataaaattgacttggcagtcctcaggctaca 123
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 278 caatctttcagtctactttcatttatttcataaaatagacttggcagtcctcaggctaca 219

                                                                       
Query: 124 ttgtgaataaaagtaagggagggaggccagagagaagggagagaaagaggggtaaaagaa 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 218 ttgtgaataaaagtaagggagggaggccggagagaagggagagaaagaggggtaaaagaa 159

                                           
Query: 184 gggaggaagagatagaggcagggagggagggg 215
           ||||||||||||||||||||||||||||||||
Sbjct: 158 gggaggaagagatagaggcagggagggagggg 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no139_l20.g1 MSMg01no139_l20.g1 CHROMAT_FILE:
MSMg01no139_l20.g1 PHD_FILE: MSMg01no139_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:14 2005
         (652 letters)



>mm_chr10_109689662_109690713
          Length = 1052

 Score = 1191 bits (616), Expect = 0.0
 Identities = 643/652 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcctcacatttgtgctttgtcgtatccattctggggataaatagaggtaaataaaacta 60
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 201 atcctcacatttgtgctttgtcgtatccgttctggggataaacagaggtaaataaaacta 260

                                                                       
Query: 61  tacgctctagagaaaagcatgaatcatgttattagctaaactgctatcaaattttcctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacgctctagagaaaagcatgaatcatgttattagctaaactgctatcaaattttcctac 320

                                                                       
Query: 121 caacccaagtttgctggatttattcggcattgactctgaaggcacgctcttaaattcata 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcccaagtttgctggatttattcggcattgactctgaaggcacgctcttaaattcata 380

                                                                       
Query: 181 cgattgtgactgttgtctagtcttttggtccctctgtttcggtctgtcaagattcataaa 240
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 381 cgattgtgactgttgtctagtcttttggtccctctgtttcagtctgtcaagattcataga 440

                                                                       
Query: 241 aacttccaagtgtagaagaaacagaatacctttcaaaaagcttatgacattcaaacttag 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 aacttccaagtgtagaagaaacagaattcctttcaaaaagcttatgacattcaaacttag 500

                                                                       
Query: 301 acatacatatgaaaatcatcaatttgaatgaatcagaggaactatttaatgaataccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatacatatgaaaatcatcaatttgaatgaatcagaggaactatttaatgaataccatt 560

                                                                       
Query: 361 gaaggttaattatgattcaacaactgcccaacacaatatatatgcaaatactccgagtgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gaaggttaattatgattcaacaactgcccaacacaatatatatgcaaatattccgagtgt 620

                                                                       
Query: 421 gtgatggattgaccttagaaagagtttagaaaacaaattcctctctagtccactcaacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgatggattgaccttagaaagagtttagaaaacaaattcctctctagtccactcaacat 680

                                                                       
Query: 481 ttccccactgggaaactacatcttatgactattttcttgaatactttctgagcaagctaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttccccactgggaaactacatcttatgactattttcttgaatactttctgagcaagctaa 740

                                                                       
Query: 541 agatgtttgaatagtaacatccttataagagtttaaggatggatgaagaataaacataaa 600
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agatgtttgaataataacatccttataagagtttaaggatggatgaagaataaacataaa 800

                                                               
Query: 601 ttcaaagttagagatagtaaatgtctctattttaaaggctttttactcaacc 652
           |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 801 ttcaaagttagagatagtaaatgtgtctattttaaaggctttttactcaacc 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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