BAC Information

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BAC

Clone NameMSMg01-140F02
Chromosome10 (Build37)
Map Location 119,632,711 - 119,789,840
singlet/doubletdoublet
Overlap geneIrak3, Tmbim4, 1190005P17Rik
Upstream geneCand1, Grip1, Helb
Downstream geneHmga2, LOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140F02.T7 (MSMg01no140_f02.b1)MSMg01-140F02.TJ (MSMg01no140_f02.g1)
ACCAG345488AG345489
length732725
length of high quality
(start - end)
327 (46 - 372)228 (71 - 298)
definitionCHROMAT_FILE: MSMg01no140_f02.b1 PHD_FILE: MSMg01no140_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:00 2005CHROMAT_FILE: MSMg01no140_f02.g1 PHD_FILE: MSMg01no140_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,789,501 - 119,789,840)(119,632,711 - 119,632,938)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGCGCGGA
ATTCCATCTCCTGACCCCCTCCTGATTGCTTTTGCCTTCTCCCTCATATG
CAGGTCTGATGCATACCCTAGCGAGGTATGTGTTTTAATTCCAGTCCGTT
GGCCCCCATCAACTTATATATCCCATCGTCTAATCTTGATTCTGATGAGG
TCTAAGGAGGAAGAAATTAATGTGTTCATTGATCTGCTGTTTATCAGTAA
CTATCCACGCGTGAATCTGAGAAGTGTTAATTATTATAATCCCCATCACA
TGCACAAACATGTACGTATACCCCATCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTGTGTGTGAGTGTGTGTGTGTGCGTGTGTTT
GCGCCTGTCTTTTCCTTTTCCCCCCTTCCTTCCCCTTTTTTTTCTCCTCT
CTCCTTTCCTCTTTTCTTTTTTCTTTTTGCTTTCTCTCTCCCTCTCTTTT
TTTTCTCTATTTTCTTCCCCCCTTATATCTTTCTCTTTTTTTCTTCTTTT
TACTTTTTTCTGCTCTCTTTCCTTCCTTTTTATTTTCCTTTCTTCCCTTT
TACTTCTCCTTTTTTACCCTCTCATTTCTTTTTCCCCCCTTACTATATTT
TCTTCTCCCCCCCCTCCCCTCTCATTTTCCTCCCCATTTCCTTCCTCCCC
TTCTTTTATTTATCTGTTATTCTTCCTCTCCT
ATAATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGTCCTGATTTCCTTTTGTTGATGAATAG
CAATGTGGAAGTGTAAGCTGAATAAACCCTTTCCTTGCCAACTTGCTTCT
TGGTCATGGTGTTTTGTGCAGGAATAGAAACTCTGACTAAAACAAGCACT
AAGCACGCCTCAGAACTGTCAAGGTCATCCAAAAGCAGCCTGAGATGAGA
CAGTCCAAAGGAGAAAGAGTGTGTGTGCGGAATTGTGACATGGTAACTCA
GAGGGAGGGCTGGGATGGAGTCCAAAAGAGGAATGGGAGTCTGGGAAAAA
TAATAGGAGTGTGATCGCACTATGGACTTCAGTCCAATGATTGCATGTTA
GGCTTGTAACACACATATCATATTCCTGTGAAATACTATCAACGCCAGAT
TATGTTCCCAGATTTCCTGCTATAACTTTCTATGCACAGGATAACTGCTA
CCTCTTTATTATCTTCTGTATCCTTACCCCTAGCTTAAAGCTGCTTGGCT
TTCTCATAAATTTTTATTTATTTATTTTTTTTTCTCACTTAACGCATTTC
TCATCAATCGCTACCTGCCTCCCTACTCATCCCCATTACTGACTTCCTTT
TCCTTCCAAGTTGATTAGCTATCTCACCTGGTTTTTGCTCGTCTTTCCCT
TTTCCGCTCCTCTTGTAAATTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_f02.b1 MSMg01no140_f02.b1 CHROMAT_FILE:
MSMg01no140_f02.b1 PHD_FILE: MSMg01no140_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:00 2005
         (327 letters)



>mm_chr10_119789291_119790017
          Length = 727

 Score =  503 bits (260), Expect = e-147
 Identities = 313/342 (91%), Gaps = 21/342 (6%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattccatctcct--gaccccctcctgattgcttttgccttctcc-ctcatatgc--- 56
           |||||||||||||||  ||   ||||||||||||||||||||||||| |||||||||   
Sbjct: 550 ggaattccatctcctggga--gcctcctgattgcttttgccttctccactcatatgcagg 493

                                                                       
Query: 57  -------------aggtctgatgcataccctagcgaggtatgtgttttaattccagtccg 103
                        |||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 492 ctgagaggcctttaggtctgatgcataccctagcgaggtatgtgtttcaattccagtcct 433

                                                                       
Query: 104 ttggcccccatcaacttatatatcccatcgtctaatcttgattctgatgaggtctaagga 163
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 432 ttggcccccatcaacttatatatcccatcgtctaatcttgattctgatggggtctaagga 373

                                                                       
Query: 164 ggaagaaattaatgtgttcattgatctgctgtttatcagtaactatccacgcgtgaatct 223
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 372 ggaagaaattaatgtgttcattgatctgctgtttatcagtaactatccacacgtgaatct 313

                                                                       
Query: 224 gagaagtgttaattattataatccccatcacatgcacaaacatgtacgtataccccatct 283
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 312 gagaagtgttaattattataatccccatcacatgcacaaacatgtatgtataccccgtct 253

                                                     
Query: 284 ctctctctctctctctctctctctctctctctctctctctct 325
           ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 252 ctctctctctctctccctctctctctctctctctctctctct 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no140_f02.g1 MSMg01no140_f02.g1 CHROMAT_FILE:
MSMg01no140_f02.g1 PHD_FILE: MSMg01no140_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:01 2005
         (228 letters)



>mm_chr10_119632511_119633138
          Length = 628

 Score =  395 bits (204), Expect = e-114
 Identities = 222/228 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtcctgatttccttttgttgatgaatagcaatgtggaagtgtaagctgaataaaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcctgatttccttttgttgatgaatagcaatgtggaagtgtaagctgaataaaccct 260

                                                                       
Query: 61  ttccttgccaacttgcttcttggtcatggtgttttgtgcaggaatagaaactctgactaa 120
           |||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ttcctccccaacttgcttcttggtcatggtgttttgtgcaggaatagaaactttgactaa 320

                                                                       
Query: 121 aacaagcactaagcacgcctcagaactgtcaaggtcatccaaaagcagcctgagatgaga 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaagcactaagcatgcctcagaactgtcaaggtcatccaaaagcagcctgagatgaga 380

                                                           
Query: 181 cagtccaaaggagaaagagtgtgtgtgcggaattgtgacatggtaact 228
           |||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 cagtacaaaggagaaagagtgtgtgtgtggaattgtgacatggtaact 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)