BAC Information

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BAC

Clone NameMSMg01-140F13
Chromosome10 (Build37)
Map Location 94,678,650 - 94,679,174
singlet/doubletsinglet
Overlap geneCradd
Upstream geneNdufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
Downstream geneSocs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1, EG432491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140F13.T7 (MSMg01no140_f13.b1)MSMg01-140F13.TJ (MSMg01no140_f13.g1)
ACCAG345510AG345511
length709698
length of high quality
(start - end)
525 (73 - 597)524 (70 - 593)
definitionCHROMAT_FILE: MSMg01no140_f13.b1 PHD_FILE: MSMg01no140_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:03 2005CHROMAT_FILE: MSMg01no140_f13.g1 PHD_FILE: MSMg01no140_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTGCAAGAGAATCCGCGG
AATTCTAAGATGTTCCTAACCACATGTAAGTTGGCACAGTTTTTCAAAAC
ATTTCTCACTCTATGCTTCCCTGGAAAAGCTTAGAGAATAGTTCCTATTT
GAAGAACGGACTGCCGGAGGGGTAGCCTGGTGTCACAGTGAAAGACTCAA
GAGGGGTAGCCTGGTGTCACTCAAGATAAAATACAGAATTCAGGGACCTG
GGCCTTAGAAATCATGGGGAGAAAAGGAAAGAGAAACTTGCAGAAAGGAG
GCGAGAGGATGCTGGAGGCTCCTCCCTAATTCATACCATGGCCTTGGCTG
GACCTCTCTATGGGAAGGATTCACATCTCACTGCTTTCTGTGTTAAATCA
TTTACACCTGAGAATTCCAGCTAACACCTGCAATGACTAGTTTGAAGAGT
TAAATAGCAGAAATGAGTTAAGTAGTAAAAAGTTGCCCATCATTGATATT
GTCACTTAGAGAAGTTTAAAGTTACACACTAGCAATTTTTACAATGTCCA
CTAAGAATTCCAAGGTTAGTAGTTGTAGCAATTGCTGTTTTAGTGACTCC
AGTAGCAACATTTTCTATATAACGGCTAGACGTTACTATATGTGAGATGC
CTATCCAGTTATGTGGTAAGCTGTTTGTTTAAGTCCTTATAGCGGATGCT
TTTTTATCC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTGGTAGTTAGGTTCATATAAGTGCAGAA
AAAATTTAATGTTCATGTCAAAACCCATTTTCCTTAAAGAACAAGGTTAT
GTTCTTAACAGCGTTTTATTAGCTGGAGTCTCATGTAGCTTAGACTGGCT
TCATACTTACTAGAGAGCTGAGGGTAACCTGGAACTTTTGATCTTCCTGC
CTCGACCTCTCTATTGCTAGGCATGAACCCCCATGCCAGGCCTGCTTAAC
TTTATTTTATTTTATTTTTCAAGGACATGGTTTGGTTGCATATGCAGCCC
AGGGTAACTTCAAATCTGATAACCTCTTTTTCTTTTTTAAAAATGTATTT
ATTTTATGTATGAGTACACTGTCACTGTCTTCAGACTCACCAGAAGAGGG
CATTGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAA
TTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTCCTTAACCAATGAGCC
ATCTCTCCAGCCCCTAATATCCTCTTTTCTTAGCCTCTTCGACCCATATC
CCACGCTCATGTTTTCTTCCTTTCTTTTCTCCCCCTTCCCTTTGGTATGT
GTGCACTTCTTTTACTGGGCTTCGAATTGAACCCATCAAGTCACATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_f13.b1 MSMg01no140_f13.b1 CHROMAT_FILE:
MSMg01no140_f13.b1 PHD_FILE: MSMg01no140_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:03 2005
         (525 letters)



>mm_chr10_94678450_94679374
          Length = 925

 Score =  953 bits (493), Expect = 0.0
 Identities = 517/525 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtaagttggcacagtttttcaaaacatttctcactctatgcttccctggaaaagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 catgtaagttggcacagtttttcaaaacatttctcactctatgcttccctggaaaagctt 666

                                                                       
Query: 61  agagaatagttcctatttgaagaacggactgccggaggggtagcctggtgtcacagtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agagaatagttcctatttgaagaacggactgccggaggggtagcctggtgtcacagtgaa 606

                                                                       
Query: 121 agactcaagaggggtagcctggtgtcactcaagataaaatacagaattcagggacctggg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 agactcaaggggggtagcctggtgtcactcaagataaaatacagaattcagggacctggg 546

                                                                       
Query: 181 ccttagaaatcatggggagaaaaggaaagagaaacttgcagaaaggaggcgagaggatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ccttagaaatcatggggagaaaaggaaagagaaacttgcagaaaggaggcgagaggatgc 486

                                                                       
Query: 241 tggaggctcctccctaattcataccatggccttggctggacctctctatgggaaggattc 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tggaggctcctccctatttcataccatggccttggctggacctctctatgggaaggattc 426

                                                                       
Query: 301 acatctcactgctttctgtgttaaatcatttacacctgagaattccagctaacacctgca 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 425 acatctcactgctttctgtgttaaatcatttacacccgagaattccagctaacacctgca 366

                                                                       
Query: 361 atgactagtttgaagagttaaatagcagaaatgagttaagtagtaaaaagttgcccatca 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 365 atgactagtttgaagagttaaatagtagaaatgagttaagtagtaaaaagttgcccacca 306

                                                                       
Query: 421 ttgatattgtcacttagagaagtttaaagttacacactagcaatttttacaatgtccact 480
           ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttgatattgtctcttaggggagtttaaagttacacactagcaatttttacaatgtccact 246

                                                        
Query: 481 aagaattccaaggttagtagttgtagcaattgctgttttagtgac 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aagaattccaaggttagtagttgtagcaattgctgttttagtgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)