BAC Information

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BAC

Clone NameMSMg01-140I21
Chromosome10 (Build37)
Map Location 9,975,282 - 9,975,698
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
Downstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1, Shprh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140I21.T7 (MSMg01no140_i21.b1)MSMg01-140I21.TJ (MSMg01no140_i21.g1)
ACCAG345659AG345660
length732724
length of high quality
(start - end)
418 (49 - 466)411 (73 - 483)
definitionCHROMAT_FILE: MSMg01no140_i21.b1 PHD_FILE: MSMg01no140_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:19 2005CHROMAT_FILE: MSMg01no140_i21.g1 PHD_FILE: MSMg01no140_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCG
GAATTCACAACATTATTCCCTGGCTGAAACATTAAATTAGTGTATATGAC
ATTTATAAGCATGAATCAAATGCAGCATCTATCCTATTATAGTAGGAATA
GGTGACCCAGGCCTAGAGGCAGGGACGTGGAGAAAATGTCTTCTGGACAA
GCTTGGAAATAACTTTCAAAAGAGGCACACACAGTTCTATCTTCCTTTTT
TACTCCCTAAGTAATTGAGGAAACACAAATATGTGTATGTGTGTGATGTG
TGTGTGTGTACGCTCGTGCATGCACACTAGTTAAGTATGCTTTTGTTTAT
ATTTTTTCCACTGGAAAGAACATTACTGGAGGACAAGAAAGAAAGTGTAA
TAAATCATTTAGGGAGAATCTAAAGGCGTGAGAAATAACCTCTGTCAGGA
GAGTATAATATTGAAAACAAGGAAGAAGGTAAATTTTGTTGCTGGAGAAA
TGATGAACAAATCATTACCAAGCCAAGTATATGCCATATTAATGGACAGA
GGAGAGACAGAAACATTTTTGTTACTCGTCCAAACAACTTGTCATTGTAC
TGTCTGGGCCAAGGCCCTCACAGTCAGTTCATTTATTCATACTTACCTAT
ATTCTGCTCTCCATACCACCGGCTCTTATTTAGAACCACCTATCTCCTCC
CTTTTTTTCCCGCCCTCGTTCGCCCTGATATT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCGCTAAACCCATCTGGTCCTGGGCTT
TTTTTTTTTTTTTTTTTTTTCTGTTTTTGGTTGGGAGACTATTAATGACT
GCTTCTATTTCTTTAGGGGAAATAGGACTGTTTAGATCATTAATCTGATC
CTGATTTAACTTTGATACCTGGTATCTGTCTAGGAAATTGTCCCTTTCAT
CCAAGTTTTCCAGTTTTGTTGAGTATAGCCATTTATAGTATGATCTGATG
GTGTTTTGAATTTCCTCGGGTTCTGTTGTTATGTCTCCCTTTTCATTTCT
GATTTTGTTAATTAGGATTATTTCCCTGTGCCCTCTAGTTAGTCTGGCTA
AGGATTTATCTATCTTGTTGATTTTCTCACAGAACCAGCTCCTGGTTTGG
TTGGTGTTTTGAATAGTTGTTTTTTTTCCCACTTGGTTGATTCCAGCCCT
AAATTTGAATATTTCCTGCCGGCCACTCCTCTTGGTTAAATTCGCTTCCT
TCTGTTTCAAATCTTTTATGTTGTTTGCCCTGTCCATCCAATACTTGTTT
TCTCGCTCACCCCCCCCTTCGATTGTACTCCTTGTCAATTTTTTCCGTTT
ACCTTACACCCTTTCCCTTCCCCCACGTATTTCCAATACCTTCCGTGTTA
ATTCCTCATCCCCTTTGCCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_i21.b1 MSMg01no140_i21.b1 CHROMAT_FILE:
MSMg01no140_i21.b1 PHD_FILE: MSMg01no140_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:19 2005
         (418 letters)



>mm_chr10_9975081_9975898
          Length = 818

 Score =  752 bits (389), Expect = 0.0
 Identities = 410/421 (97%), Gaps = 9/421 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcacaacatta---ttccctggctgaaacattaaattagtgtatatgacatttata 59
           |||||||||||||||   ||    ||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcacaacattaagatt----ggctgaaacattaaattagtgtatatgacatttata 257

                                                                       
Query: 60  agcatgaatcaaatgcagcatctatcctattatagtaggaataggtgacccaggcctaga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agcatgaatcaaatgcagcatctatcctattatagtaggaataggtgacccaggcctaga 317

                                                                       
Query: 120 ggcagggacgtggagaaaatgtcttctggacaagcttggaaataactttcaaaagaggca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggcagggacgtggagaaaatgtcttctggacaagcttggaaataactttcaaaagaggca 377

                                                                       
Query: 180 cacacagttctatcttccttttttactccctaagtaattgaggaaacacaaatatgtgta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cacacagttctatcttccttttttactccctaagtaattgaggaaacacaaatatgtgta 437

                                                                       
Query: 240 tgtgtgtgatgtgtgtgtgtgt--acgctcgtgcatgcacactagttaagtatgcttttg 297
           ||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||
Sbjct: 438 tgtgtgtgatgtgtgtgtgtgtgtacgctcgtgcatgcacaccagttaagtatgcttttg 497

                                                                       
Query: 298 tttatattttttccactggaaagaacattactggaggacaagaaagaaagtgtaataaat 357
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 498 tttatattttttccactggaaagaacattaatggaggacaagaaagaaagtgtaataaat 557

                                                                       
Query: 358 catttagggagaatctaaaggcgtgagaaataacctctgtcaggagagtataatattgaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 catttagggagaatctaaaggcgtgagaaataacctctgtcaggagagtataatattgaa 617

            
Query: 418 a 418
           |
Sbjct: 618 a 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)