BAC Information

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BAC

Clone NameMSMg01-140J15
Chromosome10 (Build37)
Map Location 34,114,279 - 34,225,331
singlet/doubletdoublet
Overlap geneNt5dc1, Col10a1, Frk
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4
Downstream geneLOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140J15.T7 (MSMg01no140_j15.b1)MSMg01-140J15.TJ (MSMg01no140_j15.g1)
ACCAG345692AG345693
length708708
length of high quality
(start - end)
526 (65 - 590)337 (72 - 408)
definitionCHROMAT_FILE: MSMg01no140_j15.b1 PHD_FILE: MSMg01no140_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:23 2005CHROMAT_FILE: MSMg01no140_j15.g1 PHD_FILE: MSMg01no140_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,224,806 - 34,225,331)(34,114,279 - 34,114,615)
sequence
CAAAATTTGCGGCGCTATACGACTCCTATCGAAGAGGATCCGCGGAATTC
AAATGATTCACTCAGAAGTACCAAGGACTCCTCAAGAAATGAGTGCTGAG
TAGCAACTTTGAAAAAACTATTTGGCCTCATGCATAGCATCTTAATATTG
TATAATTAATATTCAGAAATGTGAGATCAGATTAGCATTATAATGATCTG
ACACCCACCAGTAATATTGCTCCTTCAGAAGGACCACATGAGATTTCTCG
GAACCATTTAATTCAGCTGCCAATGACCTATGCAACATTTGTGTTAGTGG
AAATATTTTTTTCTTTATGATTCTAAATTCTTTTCAAATTACTATGTACA
TGAAGTTCAGAAGTTCCTAGTAATTGCATTCCTTGAATTATACTTTTCAT
TTTATCCTCAAAAAAGGCAGAGAAATCATGAAAAGTTCTCCTACTAATTT
TTTTCAAAACTTGAAGGCAATACAAACCATCATGTGAATTATAAAAGTAC
ATATAAATATTAAAGAGTTTGACTTGCAAATTAACTCAATTTTTAAATAG
AAAACATCTAACTGAAGAAACTCTTTAGAAAAAGCATGACATAACAGAAA
GATCTTATACACTGGGTAGTGTCTGAATTTTAGCTAAATAAGCCATAAGG
AGGGTAATAGGATCACATGATCTATATCTGCATCTATGCATTTTAGCAAA
ACTCTGAT
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGGCCCAGCTGGAATTTCTGTGCCAGGA
AAACCTGGACAGCAGGGACTTACAGGTGCCCCAGGACCTAGGGGCTTTCC
TGGAGAGAAGGGTGCACCAGGAGCCCCTGGTGTGAATGGGCGGAAAGGGG
AAACAGGATATGGCTCTCCTGGCCGTCCAGGTGAGAGGGGTCTTCCAGGC
CCTCAAGGTCCCATAGGACCCCCTGGCCCCTCTGGAGTGGGAAGAAGAGG
TGAAAACGGCTTTCCAGTACAGCCGGGCATCAAAGGTGACCGGGGTTTCC
CAGGAGAAATGGGACCATCAGGTCCACCAGGTCCCCAAGGTCCTCCCGGG
AAGCAAGGACGAGAAGGTATTGGGAAGCCAGGAGCCATTGGATCCCCTGG
TCAGCCAGGTATCCCAGGAGAAAAAGGCCACCCAGGGGCTCCAGGAATAG
CTGGGTCTCCAGGAGCTCCTGGCTTTGGAAAACAAGGCTTGCCAGGTTTG
ATGGGACAAAGGGGACCTGCTGGTCTTCCTGTGGCTCCAGGTGCCAAAGG
GTAACGAGGGCCAGCTGGTCATCCTGTATAACCGGCTCTGTCTGGATCCC
CTGCGAATATGCTACCCCCAGGATCTTTAGGAATCTCAGGTATCTATGGC
CTTCTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_j15.b1 MSMg01no140_j15.b1 CHROMAT_FILE:
MSMg01no140_j15.b1 PHD_FILE: MSMg01no140_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:23 2005
         (526 letters)



>mm_chr10_34224606_34225531
          Length = 926

 Score =  978 bits (506), Expect = 0.0
 Identities = 521/526 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagtaccaaggactcctcaagaaatgagtgctgagtagcaactttgaaaaaactatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaagtaccaaggactcctcaagaaatgagtgctgagtagcaactttgaaaaaactatttg 667

                                                                       
Query: 61  gcctcatgcatagcatcttaatattgtataattaatattcagaaatgtgagatcagatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gcctcatgcatagcatcttaatattgtataattaatattcagaaatgtgagatcagatta 607

                                                                       
Query: 121 gcattataatgatctgacacccaccagtaatattgctccttcagaaggaccacatgagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gcattataatgatctgacacccaccagtaatattgctccttcagaaggaccacatgagat 547

                                                                       
Query: 181 ttctcggaaccatttaattcagctgccaatgacctatgcaacatttgtgttagtggaaat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttctcggaaccatttaaatcagctgccaatgacctatgcaacatttgtgttagtggaaat 487

                                                                       
Query: 241 atttttttctttatgattctaaattcttttcaaattactatgtacatgaagttcagaagt 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atttttttcagtatgattctaaattcttttcaaattactatgtacatgaagttcagaagt 427

                                                                       
Query: 301 tcctagtaattgcattccttgaattatacttttcattttatcctcaaaaaaggcagagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcctagtaattgcattccttgaattatacttttcattttatcctcaaaaaaggcagagaa 367

                                                                       
Query: 361 atcatgaaaagttctcctactaatttttttcaaaacttgaaggcaatacaaaccatcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 366 atcatgaaaagttctcctactaatttttttcaaaacttgaaggcaatacgaaccatcatg 307

                                                                       
Query: 421 tgaattataaaagtacatataaatattaaagagtttgacttgcaaattaactcaattttt 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 306 tgaattataaaagtacatataaatattaaagactttgacttgcaaattaactcaattttt 247

                                                         
Query: 481 aaatagaaaacatctaactgaagaaactctttagaaaaagcatgac 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaatagaaaacatctaactgaagaaactctttagaaaaagcatgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no140_j15.g1 MSMg01no140_j15.g1 CHROMAT_FILE:
MSMg01no140_j15.g1 PHD_FILE: MSMg01no140_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:23 2005
         (337 letters)



>mm_chr10_34114079_34114815
          Length = 737

 Score =  636 bits (329), Expect = 0.0
 Identities = 335/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcccagctggaatttctgtgccaggaaaacctggacagcagggacttacaggtgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggcccagctggaatttctgtgccaggaaaacctggacagcagggacttacaggtgccc 260

                                                                       
Query: 61  caggacctaggggctttcctggagagaagggtgcaccaggagcccctggtgtgaatgggc 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 caggacctaggggctttcctggagagaagggtgcacaaggagcccctggtgtgaatgggc 320

                                                                       
Query: 121 ggaaaggggaaacaggatatggctctcctggccgtccaggtgagaggggtcttccaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaaggggaaacaggatatggctctcctggccgtccaggtgagaggggtcttccaggcc 380

                                                                       
Query: 181 ctcaaggtcccataggaccccctggcccctctggagtgggaagaagaggtgaaaacggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaaggtcccataggaccccctggcccctctggagtgggaagaagaggtgaaaacggct 440

                                                                       
Query: 241 ttccagtacagccgggcatcaaaggtgaccggggtttcccaggagaaatgggaccatcag 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccaggacagccgggcatcaaaggtgaccggggtttcccaggagaaatgggaccatcag 500

                                                
Query: 301 gtccaccaggtccccaaggtcctcccgggaagcaagg 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccaccaggtccccaaggtcctcccgggaagcaagg 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)