BAC Information

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BAC

Clone NameMSMg01-140P01
Chromosome10 (Build37)
Map Location 98,123,264 - 98,123,544
singlet/doubletsinglet
Overlap geneEG432494
Upstream geneEpyc, 4921510H08Rik, EG667438
Downstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140P01.T7 (MSMg01no140_p01.b1)MSMg01-140P01.TJ (MSMg01no140_p01.g1)
ACCAG345947AG345948
length683712
length of high quality
(start - end)
283 (69 - 351)606 (77 - 682)
definitionCHROMAT_FILE: MSMg01no140_p01.b1 PHD_FILE: MSMg01no140_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:50 2005CHROMAT_FILE: MSMg01no140_p01.g1 PHD_FILE: MSMg01no140_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAATTTGCGGCGCTAAACACTCACTATCGAAGAGGATCCGCGGAATTC
TTCTATCTCTACCTTAGAGTGCAATTTGAAATAACAGTGTGTGCTCACAC
AGTTGCCCCACCCACTATGAAAGGAGTTCTATTCAAAGAGCAAAGGCTGT
CTCAGTTGTCTCCTTAGTCTTCAGGTATTGGCACACAATGAGCATTCGTA
AAATGTTTTTGTACTTGTATCATGACTATTCCCAACTGAGAAATGCAGTC
ACTTCCCAAGACCCAAAGACATGTTTGTCTCAGACTTGGTCAGATAACAT
CAGGCCAAGAAGTCAGGGAGTGGCAGTGAAGAGCAGCAGCCAAGGATCCC
TGGTCAAAGAAGTGCAGAACTGGGTTCTTTTGGGCCTGTGCTCCCAGGCA
CTGGGAAGGGCATAATTTGCCCTTTTCATTTCCTTTTTCCCAAAAAAAAG
GGAAAAAATGGTATGTCCTTGCCCAAGGGGGCCCCTTGCCAAAAAACTTT
CCCCCCTGGCAAATTATAAACCCTCCCCTTGAAAACCAAAATTTTGGGGG
CCCGGTTTTTATAACCAAAAAATATTTTTGATTTGTGGGGGGGAAAAACC
CCCTCAAAAATGGGGTGGTCGCCTCTGTTTTTCCCCCAAAAGGGCCAAAA
AAAAAAAAAAAATCTTTTTCATCATGGTCTCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAACAGAGGAATCTCCAGTGGCC
GAGAAGCACTTAGAGGAATGTTCAAAGTCCTTAATCATCAGAGAAATGCA
AATCAAAACAATGCTGAGATTCCACTTCACACCAATCAGAATGGCTAAGA
TCAAAAACTCAAGTGCCAGCACATGCTGGCTAAGATGTAGAGAAAAAACA
ACACTCCTCCATTGCTGGTGTGATTGAAAATTGGTACAATCACTCTCGAA
ATCAATCTGGAGATTTCTTAGAAAACTGGAAACCTGAAAGCAAAGTTATA
CACTCTTTGGTATGTATCCAAAAGATCCTCCACCATACCACAAGAACATG
TGCTCCACCATGTTCATAGCAGCCTTATTTGTAATAGCCAGAAGCTGGAA
ACAACCCAGATGTCCCTCAACTGAAGAATGGATACAAAAAATGTGGTTCA
TTTACACAATGAAATACTACTCAGCTATTAAAAACAAGGACACCATGAAT
TTCACAGACAAATGAGTGGAACTAGAAAATATTACCCTGACTGAGGTAAC
TCAAAAGGACATGCATGATATGTATTCATTAATAAGTATATTTTAGCCCA
AAAGTACAGAATACCTAGGATATATCCCACAGACTGTAAGAAAGACCCTA
GAGAGGATGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_p01.b1 MSMg01no140_p01.b1 CHROMAT_FILE:
MSMg01no140_p01.b1 PHD_FILE: MSMg01no140_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:50 2005
         (283 letters)



>mm_chr10_98123064_98123746
          Length = 683

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgcaatttgaaataacagtgtgtgctcacacagttgccccacccactatgaaaggagtt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 gtgcaatttgaaataacagtgtgtgcttacacagttgccccacccactatgaaaggagtt 260

                                                                       
Query: 61  ctattcaaagagcaaaggctgtctcagttgtctccttagtcttcaggtattggcacacaa 120
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctattcaaagagcagaggttgtctcagttgtctccttagtcttcaggtattggcacacaa 320

                                                                       
Query: 121 tgagcattcgtaaaatgtttttgtacttgtatcatgactattcccaactgagaaatgcag 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagcattcataaaatgtttttgtacttgtatcatgactattcccaactgagaaatgcag 380

                                                                       
Query: 181 tcacttcccaagacccaaagacatgtttgtctcagacttggtcagataacatcaggccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacttcccaagacccaaagacatgtttgtctcagacttggtcagataacatcaggccaa 440

                                                    
Query: 241 gaagtcagggagtggcagtgaagagcagcagccaaggatcc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagtcagggagtggcagtgaagagcagcagccaaggatcc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)