Query= MSMg01no141_f01.b1 MSMg01no141_f01.b1 CHROMAT_FILE:
MSMg01no141_f01.b1 PHD_FILE: MSMg01no141_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:34 2005
(653 letters)
>mm_chr10_7065007_7066054
Length = 1048
Score = 1208 bits (625), Expect = 0.0
Identities = 644/653 (98%), Gaps = 5/653 (0%)
Strand = Plus / Minus
Query: 1 attaaaggtgtacatcactactacccagcctcggttttttaattaaagtagaaacatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 attaaaggtgtacatcactactacccagcctcggttttttaattaaagtagaaacatttg 611
Query: 61 ggtaccattctcttcttctagtaattgctttattttttaaatttcccacagattatttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ggtaccattctcttcttctagtaattgctttattttttaaatttcccacagattatttcc 551
Query: 121 taacaggtctaacaaactatacctgagtgtcttctgccatcttacaaatccccccccccc 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 550 taacaggtctaacaaactatacctgagtgtcttctgccatcttacaaat-----cccccc 496
Query: 181 caaccacttctaccacagttacagaaaaccaccaagcaagactaggaaaccacagtagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caaccacttctaccacagttacagaaaaccaccaagcaagactaggaaaccacagtagtc 436
Query: 241 aagaagtcaccacagcgagaagccacagctgctactggtctggactcttattgtgccttt 300
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 435 aagaagtcaccacagcgggaagccacagctgctactggtctggactcacattgtgccttt 376
Query: 301 gagaatgtgcccttaactgatactgagaacctctaagctgtgaccacagcctagactagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gagaatgtgcccttaactgatactgagaacctctaagctgtgaccacagcctagactagt 316
Query: 361 gtgactgccaatgttattgtggtagagtcacatgtctccatatccatgtgtgccagccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gtgactgccaatgttattgtggtagagtcacatgtctccatatccatgtgtgccagccag 256
Query: 421 ggcaacagaggcctggccttactccaattctgctgtatttgattgatggaatctgaatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggcaacagaggcctggccttactccaattctgctgtatttgattgatggaatctgaatct 196
Query: 481 tattcaggagtttgattgcaaaggagcctggaaaatgcagttttagcttcactgtttttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tattcaggagtttgattgcaaaggagcctggaaaatgcagttttagcttcactgtttttg 136
Query: 541 tagcataggaagagacagcattaagaagataacatggacgccaggccccccactcgcttt 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 135 tagcataggaagagacagcattaagaagataacatggacgccaggcctcccactcgcttt 76
Query: 601 gccccacccccaccactggtatgcacaattagaatggaattactatagtctca 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gccccacccccaccactggtatgcacaattagaatggaattactatagtctca 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1048
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1038
Effective search space: 667434
Effective search space used: 667434
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_f01.g1 MSMg01no141_f01.g1 CHROMAT_FILE:
MSMg01no141_f01.g1 PHD_FILE: MSMg01no141_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:34 2005
(773 letters)
>mm_chr10_6939555_6940728
Length = 1174
Score = 1377 bits (712), Expect = 0.0
Identities = 754/774 (97%), Gaps = 11/774 (1%)
Strand = Plus / Plus
Query: 1 tgagaaaa-tcctaagaagggttttgtcccggagagatcatttcttggcctaaggggaag 59
|||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 201 tgagaaaaatcctaagaagggttttgtcatggagagatcatttcttgggttaaggggaag 260
Query: 60 gtgacaaaagtagaagaaaatatttggggagaaagagataaaaatatctatcttttgtga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgacaaaagtagaagaaaatatttggggagaaagagataaaaatatctatcttttgtga 320
Query: 120 aggtgaagaaaagtaaccctacagcaggaatttggcaaatatctgcttagaaagcacaca 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 aggtgaagaaaagtaaccctacagcaggaatttggcgaatatctgcttagaaagcacaca 380
Query: 180 cacacacacacacacacacatgcacaaaggccaagtatgcaactgtgtgcaagtcatctc 239
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacacaca----------tgcacaaaggccaagtatgcaactgtgtgcaagtcatctc 430
Query: 240 tagccttttcaagtgcagtgggaattacctacactagctcatgcagccaatagggggaac 299
||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 431 tagtcttttcaagtgcagtgggaataacttacactagctcatgcagccaatagggggaac 490
Query: 300 cctcacagtatggccaggatccaagtcatgtgtgcacaacgagtatgcaaagataaaata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cctcacagtatggccaggatccaagtcatgtgtgcacaacgagtatgcaaagataaaata 550
Query: 360 taccaaccaaaatctgcatccactcacagctcagtcatggaatttctcagctttgtgagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 taccaaccaaaatctgcatccactcacagctcagtcatggaatttctcagctttgtgagg 610
Query: 420 ctcttatggagaatatagaggagacactacatgagacagaaacaaacaaacccaaagcat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctcttatggagaatatagaggagacactacatgagacagaaacaaacaaacccaaagcat 670
Query: 480 ccattcccccacactcccatggtcagtctccatgagcctggtcacttaagttcctccaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ccattcccccacactcccatggtcagtctccatgagcctggtcacttaagttcctccaca 730
Query: 540 cattctgcccttctgtctacacctcaattccaagctcagaggctactatgaagccaagat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 731 cattctgcccttctgtctacacctcaattccaagctcagaggctactatgaagtcaagat 790
Query: 600 ccatttccttctttgatactcaaaaggatgggacttgtcactaccgtctccgaccagcag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ccatttccttctttgatactcaaaaggatgggacttgtcactaccgtctccgaccagcag 850
Query: 660 aaaagaagcgacgaaacccatgtccttctcaaggcagtttattcaggaacctcacaatgt 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 aaaagaagcgacgaaacccatgtccttctcaaggcagtttattcaggaacctcacaatgt 910
Query: 720 gcaggaaaaagaatgccacgacctctctcggccatccccctttataccctctcg 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 gcaggaaaaagaatgccacgacctctctcggccatccccctttataccctctcg 964
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 773
Length of database: 1174
Length adjustment: 10
Effective length of query: 763
Effective length of database: 1164
Effective search space: 888132
Effective search space used: 888132
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
