BAC Information

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BAC

Clone NameMSMg01-141I09
Chromosome10 (Build37)
Map Location 44,818,762 - 44,819,230
singlet/doubletsinglet
Overlap genePrep
Upstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974
Downstream genePopdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141I09.T7 (MSMg01no141_i09.b1)MSMg01-141I09.TJ (MSMg01no141_i09.g1)
ACCAG346373AG346374
length1,1301,281
length of high quality
(start - end)		465 (91 - 555)694 (93 - 786)
definitionCHROMAT_FILE: MSMg01no141_i09.b1 PHD_FILE: MSMg01no141_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:01 2005CHROMAT_FILE: MSMg01no141_i09.g1 PHD_FILE: MSMg01no141_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCAGCTCTTTTNNTNNGCACTGGGCGCTNXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAACTTCCCAGCAGGGGCCTTATAAAGACTAAAGATTGT
GGAACTCCTCACAGTGAGACCTTCTCAGACAGCTAGCCGAGTTCTACCCT
GGGGACTTAACTCTGTCACACCTTATTCTTGAAGTTTTTTGGTCTTTTTT
TAATCTTAAATCTTAATATGTATTACATAAAGCCATAAGATATTTTCATA
CATTAGCTTGCAATCACTAGTAATTTAAAAATACATACTTGTATATATAA
TTATAGATGTTACATATAGATTCACGTGAAAAATTCACGCGTGCACACAC
ACACACACACACAAAACATGGAGTCTGTTTTGTGCTGGCCAACTACTCCT
GGGCATGTGTCTTGCCCTGGAGTGTGGTTAGAATACACAGTGTGCTGGTC
TGGAGGCCGCCGTGGGCTCATATATTTAAATGTTTGGCCCCCAGTTAGTG
AAACTGTTTGGGAAGGATAAGGAGGTGTGGCCGTGTTGGAGGAGGCGTGT
CACTGGGGGAGGGCTTTGAGGTTTCAAAAGTCCACATCAGGTCCAGTTGT
AGTCTCTTTGCCGAACTTGTGTCTCTGATATAACCGCTTAGCTTGCTGCT
CTAGTGTCTGTCTTCCTGTCTATCTATTCATCTTTTTCTATTTTCCTTTG
TTATGTAGTTTCTTTTTTCTTTCCATTTTCCTCTTTTCCCTTTTTCTTTT
ATCCTTTTCCTTTTTTCTATTACTTCTTTTTTTTTTTTTCTCTCCCTTCT
TCTTTTATTTTTTCTCTTTTTTTATTTTTTGATTTGTTTCTTTCTCATTT
CTCCTCTCTTCTTTTTTCTCTTCTCTATCTTTCTCTTTTCTTCTTATTTT
TCCTTTTTTTTCTTCTCTCTTTTCTTTTTTTTCTTCTTTTCACTTTTTTT
TCTTTTCTACATTCCTTCCCTCTTTTTTTTTTTTTTTTTATTTTTCATCT
TTTATTTCTATCTGCATTTTTTTCTTTTATTTCCTCCTTTTCCCTCTCCT
TCTCTTCTCTTTTATCTTTTTCTTTCTTTTTTTTCTTTTTTTATTTTCTT
CCTCCTTCTATCTTTTCTATCTTTTTTCTT

NCCCTATTCTTTTTNNNTAGCATGGAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGCCTCTCAGAA
AAGGAGATGGGAAGAGTGTGGGACCCAGAGGACACACAATACACCAAGAG
AACAAGGCCTTTTGAATCAACTGAGCAAAGCCTATATGAACTCACAGAGA
CTAAAGCTGCAAGCATGGGACCTACAGGGGTTTGCATCATGTCCTCTGCA
TATATATTATTGTAGAGGAATTTTAATCGAGTAAAAAGGCTGTTCTGGCA
GGGGTCACATCCAAAGACATTCAGGTCTTTGTGGTCTGGCTAGAATACAA
ATAGGCCCTCAGAACACACATTTCATCCCTCTGGCTGGAATACAACAGCA
ACAATAAACAACAACATGTCTAGGTGAAAAACCCACAAAAATGAAAATCA
AAATAAGCAAGCAGAATCCCAATGAGACATAAATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGAGATACAGATACAGAT
ACAGATACAGATACAGATACAGATACAGATACAGATACAGATAGAATAAA
ATAAAAACCCCAAGTAATAAAATAAAACAAAAGCCCACCAAACACCATTG
AGTTTGCTTTGTATCAGCCAACTACTGGGTATGGGGCCTGCCCTGGTGTA
TGGTTGATATATCCAGTGAGACTTCATTGGGAAAACCTGATTTTCATTTG
CTAGCAGGTATCAGTTGTGAAGAGCTCCTTGACTAGAGCTGAAACCTTTG
TCTACATGCCCCTCTCAGGGCTGGGACCCTCTCTGGCTTGTGAAGGAAGG
ACTCACGATTGCCACCTAAGACTCTGCGAGTTCATAATATGCATCAGTTC
TGTTGTGGCTGGAAAACNTGCCCTTCTTGGTTTCCCCCACACCTTAATTT
CCTTCTGCCTCTCCTTTTGAAAAAACCCTTGACCCTTTAGTGGAGAAGTT
TGATGAAAAATTTTCATTCCGATCTGAAAGGTTTTAAAGTTCTCTGTCCT
TCGCAAATTGCTCTATATTGTGGGGCGGGTGTATTTTTTCCATACGGTCC
AAATAAAATTTTCTTGATTTGGTTACAATTTAGCATTAGTTCTTCTTACT
TACATANTTCTTCCTCTCATCACCCCTCTCTTTGTGTTGGTTATAATAAT
CATTCCCATATGTCTAATGAACCTTTTCACAATACTTTGTTCCCTCTACA
ATCTCTTCTACTCTTCNTTCATCTCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_i09.b1 MSMg01no141_i09.b1 CHROMAT_FILE:
MSMg01no141_i09.b1 PHD_FILE: MSMg01no141_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:01 2005
         (465 letters)



>mm_chr10_44818562_44819426
          Length = 865

 Score =  810 bits (419), Expect = 0.0
 Identities = 455/473 (96%), Gaps = 12/473 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagattgtggaactcctcacagtga----gaccttctcagacagctagccgagttcta 56
           |||||||||||||||||||||||||||    ||    |||||||||||||| ||||||||
Sbjct: 201 taaagattgtggaactcctcacagtgagaagga----ctcagacagctagctgagttcta 256

                                                                       
Query: 57  ccctggggacttaactctgtcacaccttattcttgaagttttttggtctttttttaatct 116
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cactggggacttaactctgtcacaccttattcttgaagttttttggtctttttttaatct 316

                                                                       
Query: 117 taaatcttaatatgtattacataaagccataagatattttcatacattagcttgcaatca 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 317 taaatcttaatatgtattacataaagccataagatattttcatacattagcttgcaatcg 376

                                                                       
Query: 177 ctagtaatttaaaaatacatacttgtatatataattatagatgttacatatagattcacg 236
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 377 ctagtaatttaaaaatacatacttgtatatgcaattatagatgttacatatagattcacg 436

                                                                       
Query: 237 tgaaaaattcacgcgtg----cacacacacacacacacacaaaacatggagtctgttttg 292
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgaaaaattcacgcgtgtgcacacacacacacacacacacaaaacatggagtctgttttg 496

                                                                       
Query: 293 tgctggccaactactcctgggcatgtgtcttgccctggagtgtggttagaatacacagtg 352
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 497 tgctggccaactactcctgggcatgtggcttgccctggagtgtggttagaatacacagtg 556

                                                                       
Query: 353 tgctggtctggaggccgccgtgggctcatatatttaaatgtttggcccccagttagtgaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgctggtctggaggccgccgtgggctcatatatttaaatgtttggcccccagttagtgaa 616

                                                                
Query: 413 actgtttgggaaggataaggaggtgtggccgtgttggaggaggcgtgtcactg 465
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 actgtttgggaaggataaggaggtgtggccgtgttggaggaggcgtgtcactg 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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